SMTL ID : 5id1.1 (1 other biounit)

Cetuximab Fab in complex with MPT-Cys meditope

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain B: R.38, S.40, K.43, N.88 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:K.43 Hydrogen bonds: B:K.43 Water bridges: B:R.38, B:E.46

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 5 residues within 4Å: Chain A: T.164, E.165, D.167 Chain B: V.169, H.170 10 PLIP interactions: 6 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:D.167, A:D.167 Water bridges: A:Q.166, A:D.167, A:D.167, A:S.168, B:V.169, B:V.169, B:T.171 Salt bridges: B:H.170 PO4.3: 5 residues within 4Å: Chain B: N.205, K.207, N.210, T.211, K.212 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.205, B:N.210, B:N.210

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bzymek, K.P. et al., Cyclization strategies of meditopes: affinity and diffraction studies of meditope-Fab complexes. Acta Crystallogr F Struct Biol Commun (2016)

Release Date

2016-06-15

Peptides

Cetuximab Fab light chain: A
Cetuximab Fab heavy chain: B
Meditope: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
F

Cetuximab Fab light chain

Cetuximab Fab heavy chain

Meditope

Related Entries With Identical Sequence