SMTL ID : 5ido.1

RNA Editing TUTase 1 from Trypanosoma brucei in complex with UTP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x UTP: URIDINE 5'-TRIPHOSPHATE(Non-covalent)

UTP.1: 13 residues within 4Å: Chain A: F.109, G.110, S.111, F.292, G.293, N.296, S.297, K.318, K.322, T.335, S.336, Y.337 Ligands: MG.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.337 Hydrogen bonds: A:N.296, A:S.297, A:S.336, A:S.336, A:Y.337 Water bridges: A:S.111, A:T.335, A:S.336 Salt bridges: A:K.318, A:K.318, A:K.322 pi-Stacking: A:Y.337

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.8, C.11, H.25, H.30 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.8, A:C.11, A:H.25, A:H.30

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.3: 1 residues within 4Å: Ligands: UTP.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rajappa-Titu, L. et al., RNA Editing TUTase 1: structural foundation of substrate recognition, complex interactions and drug targeting. Nucleic Acids Res. (2016)

Release Date

2016-10-26

Peptides

3' terminal uridylyl transferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3' terminal uridylyl transferase