SMTL ID : 5idt.1 (1 other biounit)

Crystal Structure of a Glucose-1-phosphate Thymidylyltransferase from Burkholderia vietnamiensis with bound Thymidine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

1 x THM: THYMIDINE(Non-covalent)

THM.1: 13 residues within 4Å: Chain A: L.17, A.18, G.19, G.20, K.34, Q.91, P.94, D.95, G.96, L.97, L.117, D.119, E.205 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.97 Hydrogen bonds: A:G.19, A:K.34, A:K.34, A:Q.91, A:Q.91, A:G.96

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: Q.99, I.102, L.206 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.99 EDO.3: 4 residues within 4Å: Chain A: Q.158, F.159, N.160 Ligands: EDO.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.160 EDO.4: 3 residues within 4Å: Chain A: N.160, A.161 Ligands: EDO.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.160 EDO.5: 6 residues within 4Å: Chain A: L.30 Chain B: Y.46, L.75, Q.81, W.82, E.263 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.46, B:L.75, B:Q.81, B:E.263

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dranow, D.M. et al., Crystal Structure of a Glucose-1-phosphate Thymidylyltransferase from Burkholderia vietnamiensis with bound Thymidine. to be published

Release Date

2016-03-09

Peptides

Glucose-1-phosphate thymidylyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glucose-1-phosphate thymidylyltransferase

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