SMTL ID : 5ie2.1 (1 other biounit)

Crystal structure of a plant enzyme

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 23 residues within 4Å: Chain A: T.170, S.171, G.172, T.173, T.174, S.175, H.214, S.289, A.290, S.291, E.310, A.311, Y.312, A.313, M.314, T.315, V.337, D.394, L.406, R.409, K.500 Ligands: MG.2, ACY.3 27 PLIP interactions: 27 interactions with chain A Hydrogen bonds: A:T.170, A:S.171, A:G.172, A:T.173, A:T.173, A:T.174, A:S.175, A:S.289, A:E.310, A:E.310, A:A.313, A:T.315, A:T.315, A:T.315, A:D.394, A:R.409 Water bridges: A:T.174, A:K.178, A:K.178, A:S.291, A:L.292, A:K.500 Salt bridges: A:H.214, A:R.409, A:K.500, A:K.500 pi-Stacking: A:Y.312

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.2: 1 residues within 4Å: Ligands: ATP.1 No protein-ligand interaction detected (PLIP)

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.3: 10 residues within 4Å: Chain A: H.214, V.215, H.216, C.288, S.289, A.313, M.314, H.319, K.500 Ligands: ATP.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.216 Water bridges: A:S.289 Salt bridges: A:H.214, A:H.319

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fan, M. et al., Crystal Structures of Arabidopsis thaliana Oxalyl-CoA Synthetase Essential for Oxalate Degradation. Mol Plant (2016)

Release Date

2016-12-07

Peptides

Oxalate--CoA ligase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Oxalate--CoA ligase

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