SMTL ID : 5iei.1

X-ray crystallographic structure of a high affinity IGF2 antagonist (Domain11 AB5 RHH) based on human IGF2R domain 11

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: S.26, G.27, R.28, A.29 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.26, A:R.28, A:A.29

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EDO.3: 2 residues within 4Å: Chain A: M.118, I.120 No protein-ligand interaction detected (PLIP)

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: Q.82, F.130 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.82 SO4.5: 5 residues within 4Å: Chain A: T.32, W.39, G.40, Y.42, G.61 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.32, A:T.32, A:G.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frago, S. et al., Functional evolution of IGF2:IGF2R domain 11 binding generates novel structural interactions and a specific IGF2 antagonist. Proc.Natl.Acad.Sci.USA (2016)

Release Date

2016-05-18

Peptides

Cation-independent mannose-6-phosphate receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cation-independent mannose-6-phosphate receptor