SMTL ID : 5iet.1

Crystal Structure of Mycobacterium Tuberculosis ATP-independent Proteasome activator

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.88 Å

Oligo State

homo-12-mer

Ligands

24 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: F.117, Q.121 Ligand excluded by PLIP SO4.2: 5 residues within 4Å: Chain A: Q.30, P.31, A.32, K.33 Chain B: L.24 Ligand excluded by PLIP SO4.6: 1 residues within 4Å: Chain B: F.117 Ligand excluded by PLIP SO4.7: 6 residues within 4Å: Chain B: E.29, Q.30, P.31, A.32, K.33 Chain I: L.24 Ligand excluded by PLIP SO4.9: 2 residues within 4Å: Chain C: F.117, Q.121 Ligand excluded by PLIP SO4.10: 5 residues within 4Å: Chain C: Q.30, P.31, A.32, K.33 Chain D: L.24 Ligand excluded by PLIP SO4.14: 1 residues within 4Å: Chain D: F.117 Ligand excluded by PLIP SO4.15: 6 residues within 4Å: Chain D: E.29, Q.30, P.31, A.32, K.33 Chain K: L.24 Ligand excluded by PLIP SO4.17: 2 residues within 4Å: Chain E: F.117, Q.121 Ligand excluded by PLIP SO4.18: 5 residues within 4Å: Chain E: Q.30, P.31, A.32, K.33 Chain F: L.24 Ligand excluded by PLIP SO4.22: 1 residues within 4Å: Chain F: F.117 Ligand excluded by PLIP SO4.23: 6 residues within 4Å: Chain F: E.29, Q.30, P.31, A.32, K.33 Chain G: L.24 Ligand excluded by PLIP SO4.25: 2 residues within 4Å: Chain G: F.117, Q.121 Ligand excluded by PLIP SO4.26: 5 residues within 4Å: Chain G: Q.30, P.31, A.32, K.33 Chain H: L.24 Ligand excluded by PLIP SO4.30: 1 residues within 4Å: Chain H: F.117 Ligand excluded by PLIP SO4.31: 6 residues within 4Å: Chain C: L.24 Chain H: E.29, Q.30, P.31, A.32, K.33 Ligand excluded by PLIP SO4.33: 2 residues within 4Å: Chain I: F.117, Q.121 Ligand excluded by PLIP SO4.34: 5 residues within 4Å: Chain I: Q.30, P.31, A.32, K.33 Chain J: L.24 Ligand excluded by PLIP SO4.38: 1 residues within 4Å: Chain J: F.117 Ligand excluded by PLIP SO4.39: 6 residues within 4Å: Chain E: L.24 Chain J: E.29, Q.30, P.31, A.32, K.33 Ligand excluded by PLIP SO4.41: 2 residues within 4Å: Chain K: F.117, Q.121 Ligand excluded by PLIP SO4.42: 5 residues within 4Å: Chain K: Q.30, P.31, A.32, K.33 Chain L: L.24 Ligand excluded by PLIP SO4.46: 1 residues within 4Å: Chain L: F.117 Ligand excluded by PLIP SO4.47: 6 residues within 4Å: Chain A: L.24 Chain L: E.29, Q.30, P.31, A.32, K.33 Ligand excluded by PLIP

24 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 2 residues within 4Å: Chain A: R.70, D.74 Ligand excluded by PLIP MPD.4: 3 residues within 4Å: Chain A: R.70, E.73, D.85 Ligand excluded by PLIP MPD.5: 5 residues within 4Å: Chain A: M.35, G.38, T.39, L.113, F.117 Ligand excluded by PLIP MPD.8: 7 residues within 4Å: Chain B: M.35, G.38, T.39, V.110, L.113, E.114, F.117 Ligand excluded by PLIP MPD.11: 2 residues within 4Å: Chain C: R.70, D.74 Ligand excluded by PLIP MPD.12: 3 residues within 4Å: Chain C: R.70, E.73, D.85 Ligand excluded by PLIP MPD.13: 5 residues within 4Å: Chain C: M.35, G.38, T.39, L.113, F.117 Ligand excluded by PLIP MPD.16: 7 residues within 4Å: Chain D: M.35, G.38, T.39, V.110, L.113, E.114, F.117 Ligand excluded by PLIP MPD.19: 2 residues within 4Å: Chain E: R.70, D.74 Ligand excluded by PLIP MPD.20: 3 residues within 4Å: Chain E: R.70, E.73, D.85 Ligand excluded by PLIP MPD.21: 5 residues within 4Å: Chain E: M.35, G.38, T.39, L.113, F.117 Ligand excluded by PLIP MPD.24: 7 residues within 4Å: Chain F: M.35, G.38, T.39, V.110, L.113, E.114, F.117 Ligand excluded by PLIP MPD.27: 2 residues within 4Å: Chain G: R.70, D.74 Ligand excluded by PLIP MPD.28: 3 residues within 4Å: Chain G: R.70, E.73, D.85 Ligand excluded by PLIP MPD.29: 5 residues within 4Å: Chain G: M.35, G.38, T.39, L.113, F.117 Ligand excluded by PLIP MPD.32: 7 residues within 4Å: Chain H: M.35, G.38, T.39, V.110, L.113, E.114, F.117 Ligand excluded by PLIP MPD.35: 2 residues within 4Å: Chain I: R.70, D.74 Ligand excluded by PLIP MPD.36: 3 residues within 4Å: Chain I: R.70, E.73, D.85 Ligand excluded by PLIP MPD.37: 5 residues within 4Å: Chain I: M.35, G.38, T.39, L.113, F.117 Ligand excluded by PLIP MPD.40: 7 residues within 4Å: Chain J: M.35, G.38, T.39, V.110, L.113, E.114, F.117 Ligand excluded by PLIP MPD.43: 2 residues within 4Å: Chain K: R.70, D.74 Ligand excluded by PLIP MPD.44: 3 residues within 4Å: Chain K: R.70, E.73, D.85 Ligand excluded by PLIP MPD.45: 5 residues within 4Å: Chain K: M.35, G.38, T.39, L.113, F.117 Ligand excluded by PLIP MPD.48: 7 residues within 4Å: Chain L: M.35, G.38, T.39, V.110, L.113, E.114, F.117 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bai, L. et al., Structural analysis of the dodecameric proteasome activator PafE in Mycobacterium tuberculosis. Proc.Natl.Acad.Sci.USA (2016)

Release Date

2016-03-30

Peptides

Bacterial proteasome activator: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

C
B

D
A

E
B

F
A

G
B

H
A

I
B

J
A

K
B

L
A

Bacterial proteasome activator