SMTL ID : 5if0.2 (1 other biounit)

Crystal structure of VRC01c-HuGL2 Fab from an HIV-1 naive donor in complex with with a germline-targeting gp120 engineered outer domain eOD-GT8 at 2.44 A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: S.16, S.17, N.18 Ligands: NAG.2 No protein-ligand interaction detected (PLIP) NAG.2: 10 residues within 4Å: Chain A: H.14, C.15, S.16, S.17, V.57, N.65, F.149, N.150, C.151 Ligands: NAG.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.57, A:F.149 Hydrogen bonds: A:H.14, A:S.17, A:N.65

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 9 residues within 4Å: Chain B: P.172, V.174, S.182, L.183, S.184 Chain C: Q.162, S.164, S.178, T.180 6 PLIP interactions: 4 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:S.164, C:S.178, C:T.180, C:T.180, B:S.184, B:S.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jardine, J.G. et al., HIV-1 broadly neutralizing antibody precursor B cells revealed by germline-targeting immunogen. Science (2016)

Release Date

2016-04-06

Peptides

Germline-targeting HIV-1 gp120 engineered outer domain eOD-GT8: A
VRC01cHuGL2 Fab heavy chain: B
VRC01c-HuGL2 Fab light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

C
L

Germline-targeting HIV-1 gp120 engineered outer domain eOD-GT8

VRC01cHuGL2 Fab heavy chain

VRC01c-HuGL2 Fab light chain

Related Entries With Identical Sequence