SMTL ID : 5ifm.2 (5 other biounits)

Human NONO (p54nrb) Homodimer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: R.89, R.91 Ligand excluded by PLIP CL.2: 2 residues within 4Å: Chain A: N.193, Q.194 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain B: R.89, R.91, E.183 Ligand excluded by PLIP

1 x PRO: PROLINE(Non-covalent)

PRO.3: 5 residues within 4Å: Chain A: P.105, Q.106, F.167, R.169, E.246 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Ligand interactions Hydrophobic interactions: A:Q.106 Hydrogen bonds: A:Q.106, A:E.246, P.3, P.3 Salt bridges: A:R.169

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: Q.122, S.145, G.146, P.148, A.149, K.152 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.122, A:Q.122, A:S.145, A:G.146, A:K.152, A:K.152 GOL.5: 6 residues within 4Å: Chain A: N.10, F.11, E.16, T.67 Chain B: V.76, E.77 5 PLIP interactions: 1 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:E.77, A:N.10, A:N.10, A:F.11, A:T.67 GOL.8: 7 residues within 4Å: Chain A: L.112, L.164 Chain B: R.200, Q.202, P.203, P.204 Ligands: K.6 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.200, B:Q.202

2 x K: POTASSIUM ION(Non-covalent)

K.6: 4 residues within 4Å: Chain A: E.115 Chain B: E.187, R.200 Ligands: GOL.8 No protein-ligand interaction detected (PLIP) K.9: 2 residues within 4Å: Chain A: R.200 Chain B: E.115 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Knott, G.J. et al., A crystallographic study of human NONO (p54(nrb)): overcoming pathological problems with purification, data collection and noncrystallographic symmetry. Acta Crystallogr D Struct Biol (2016)

Release Date

2016-11-09

Peptides

Non-POU domain-containing octamer-binding protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Non-POU domain-containing octamer-binding protein

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