SMTL ID : 5ifr.1

Structure of the stable UBE2D3-UbDha conjugate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: K.137, R.140, I.141 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.140, A:R.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mulder, M.P. et al., A cascading activity-based probe sequentially targets E1-E2-E3 ubiquitin enzymes. Nat.Chem.Biol. (2016)

Release Date

2016-05-11

Peptides

Ubiquitin-conjugating enzyme E2 D3: A
Polyubiquitin-B: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ubiquitin-conjugating enzyme E2 D3

Polyubiquitin-B