SMTL ID : 5ifs.1

Quantitative interaction mapping reveals an extended ubiquitin regulatory domain in ASPL that disrupts functional p97 hexamers and induces cell death

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.46 Å

Oligo State

hetero-2-2-mer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain B: D.205, I.206, G.207, P.246, G.248, T.249, G.250, K.251, T.252, L.253, I.380, H.384, G.408, A.409 Ligands: MG.2 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:G.207, B:G.248, B:T.249, B:T.249, B:G.250, B:K.251, B:T.252, B:T.252, B:T.252, B:L.253 Water bridges: B:G.408 Salt bridges: B:K.251 ADP.7: 16 residues within 4Å: Chain D: D.205, I.206, G.207, C.209, P.247, G.248, T.249, G.250, K.251, T.252, L.253, I.380, H.384, G.408, A.409 Ligands: MG.8 13 PLIP interactions: 13 interactions with chain D Hydrogen bonds: D:G.207, D:G.248, D:T.249, D:T.249, D:T.249, D:G.250, D:K.251, D:T.252, D:T.252, D:T.252, D:L.253 Water bridges: D:G.408 Salt bridges: D:K.251

2 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.2: 1 residues within 4Å: Ligands: ADP.1 No protein-ligand interaction detected (PLIP) MG.8: 2 residues within 4Å: Chain D: D.304 Ligands: ADP.7 No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain B: R.359, R.362 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.359, B:R.362

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 2 residues within 4Å: Chain B: R.147, K.148 No protein-ligand interaction detected (PLIP) EDO.5: 5 residues within 4Å: Chain B: N.36, Y.138, L.153, V.154, R.155 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.36, B:N.36, B:R.155, B:R.155 EDO.9: 1 residues within 4Å: Chain D: Q.398 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:Q.398

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 4 residues within 4Å: Chain B: F.131, T.180, V.181, I.182 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:I.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arumughan, A. et al., Quantitative interaction mapping reveals an extended UBX domain in ASPL that disrupts functional p97 hexamers. Nat Commun (2016)

Release Date

2016-10-26

Peptides

Tether containing UBX domain for GLUT4: AC
Transitional endoplasmic reticulum ATPase: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Tether containing UBX domain for GLUT4

Transitional endoplasmic reticulum ATPase

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