SMTL ID : 5ifw.1

Quantitative interaction mapping reveals an extended ubiquitin regulatory domain in ASPL that disrupts functional p97 hexamers and induces cell death

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

hetero-2-2-mer

Ligands

4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 14 residues within 4Å: Chain B: D.206, I.207, G.208, P.248, G.249, T.250, G.251, K.252, T.253, L.254, I.381, H.385, G.409, A.410 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:G.208, B:G.249, B:T.250, B:T.250, B:T.250, B:T.250, B:G.251, B:K.252, B:T.253, B:T.253, B:L.254, B:G.409 Salt bridges: B:K.252 ADP.2: 12 residues within 4Å: Chain B: I.480, G.481, P.521, G.522, C.523, G.524, K.525, T.526, L.527, I.657, G.685, A.686 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:G.481, B:G.481, B:G.522, B:G.524, B:K.525, B:T.526, B:T.526, B:L.527, B:T.689 Salt bridges: B:K.525 ADP.3: 14 residues within 4Å: Chain D: D.206, I.207, G.208, P.248, G.249, T.250, G.251, K.252, T.253, L.254, I.381, H.385, G.409, A.410 13 PLIP interactions: 13 interactions with chain D Hydrogen bonds: D:G.208, D:G.249, D:T.250, D:T.250, D:T.250, D:G.251, D:K.252, D:T.253, D:T.253, D:T.253, D:L.254, D:G.409 Salt bridges: D:K.252 ADP.4: 12 residues within 4Å: Chain D: I.480, G.481, P.521, G.522, C.523, G.524, K.525, T.526, L.527, I.657, G.685, A.686 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:G.481, D:G.481, D:G.522, D:G.524, D:K.525, D:T.526, D:T.526, D:T.526, D:L.527 Salt bridges: D:K.525

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arumughan, A. et al., Quantitative interaction mapping reveals an extended UBX domain in ASPL that disrupts functional p97 hexamers. Nat Commun (2016)

Release Date

2016-10-26

Peptides

Tether containing UBX domain for GLUT4: AC
Transitional endoplasmic reticulum ATPase: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Tether containing UBX domain for GLUT4

Transitional endoplasmic reticulum ATPase