SMTL ID : 5ih6.1

Human Casein Kinase 1 isoform delta (kinase domain) in complex with Epiblastin A derivative

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.50, C.71 Ligands: SRT.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.50, A:C.71

1 x SRT: S,R MESO-TARTARIC ACID(Non-covalent)

SRT.2: 4 residues within 4Å: Chain A: H.50, K.57, C.71 Ligands: ZN.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.50, A:C.71 Salt bridges: A:H.50, A:K.57

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: R.127, K.154, K.171 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.127, A:K.154, A:K.171 SO4.4: 5 residues within 4Å: Chain A: R.178, W.213, Q.214, G.215, K.224 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.215 Salt bridges: A:R.178, A:K.224

1 x AUG: 6-(3-bromophenyl)pteridine-2,4,7-triamine(Non-covalent)

AUG.5: 12 residues within 4Å: Chain A: I.23, A.36, K.38, Y.56, M.80, M.82, E.83, L.84, L.85, G.86, L.135, I.148 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.23, A:I.23, A:I.23, A:I.148 Hydrogen bonds: A:E.83, A:L.85, A:G.86 Halogen bonds: A:M.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ursu, A. et al., Epiblastin A Induces Reprogramming of Epiblast Stem Cells Into Embryonic Stem Cells by Inhibition of Casein Kinase 1. Cell Chem Biol (2016)

Release Date

2016-04-13

Peptides

Casein kinase I isoform delta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Casein kinase I isoform delta

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