SMTL ID : 5ihl.1 (3 other biounits)

STRUCTURE OF THE EXTRACELLULAR DOMAIN OF THE CD40 IN COMPLEX WITH 3H56-5 DAB

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-1-1-mer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: F.136, E.137, K.138, H.140 Chain B: R.59 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:K.138 Salt bridges: A:H.140, B:R.59 SO4.2: 4 residues within 4Å: Chain A: E.137 Chain B: N.54, Q.56, R.59 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.54, B:Q.56, A:E.137 Salt bridges: B:R.59 SO4.3: 4 residues within 4Å: Chain B: V.4, P.102, T.104, D.107 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamniuk, A.P. et al., Functional Antagonism of Human CD40 Achieved by Targeting a Unique Species-Specific Epitope. J.Mol.Biol. (2016)

Release Date

2016-06-01

Peptides

Tumor necrosis factor receptor superfamily member 5: A
3H56-5 domain antibody (dAb): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tumor necrosis factor receptor superfamily member 5

3H56-5 domain antibody (dAb)

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