SMTL ID : 5ii4.1

Crystal structure of red abalone VERL repeat 1 with linker at 2.0 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 17 residues within 4Å: Chain A: N.21, D.23, K.24, E.53, W.71, A.72, D.74, R.75, E.120, E.162, P.163, Y.164, F.165, W.239, M.339, W.349, R.353 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:W.71, A:D.74, A:R.75, A:R.75, A:E.162, A:Y.164, A:R.353 Water bridges: A:R.353

5 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.2: 6 residues within 4Å: Chain A: Y.350, T.382, V.384, I.396, Y.398, I.427 No protein-ligand interaction detected (PLIP) PGE.3: 7 residues within 4Å: Chain A: V.454, P.455, M.462, T.464, S.480, E.482, Y.484 No protein-ligand interaction detected (PLIP) PGE.4: 9 residues within 4Å: Chain A: F.101, V.119, V.268, M.330, A.333, Q.334, G.336, E.337, I.338 No protein-ligand interaction detected (PLIP) PGE.5: 9 residues within 4Å: Chain A: V.205, I.208, K.209, K.211, A.215, A.359, A.360, S.361, G.362 No protein-ligand interaction detected (PLIP) PGE.6: 4 residues within 4Å: Chain A: G.450, P.451, Y.452, S.453 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.450, A:S.453

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Raj, I. et al., Structural Basis of Egg Coat-Sperm Recognition at Fertilization. Cell (2017)

Release Date

2017-06-14

Peptides

Maltose-binding periplasmic protein,Vitelline envelope sperm lysin receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Maltose-binding periplasmic protein,Vitelline envelope sperm lysin receptor