SMTL ID : 5ii5.1

Crystal structure of red abalone VERL repeat 1 at 1.8 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 17 residues within 4Å: Chain A: N.16, D.18, K.19, E.48, W.66, A.67, D.69, R.70, E.115, E.157, P.158, Y.159, F.160, W.234, M.334, W.344, R.348 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:W.66, A:D.69, A:R.70, A:R.70, A:E.157, A:Y.159, A:R.348 Water bridges: A:R.348

4 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.2: 6 residues within 4Å: Chain A: Y.345, T.377, V.379, I.391, Y.393, I.422 No protein-ligand interaction detected (PLIP) PGE.3: 7 residues within 4Å: Chain A: R.444, Y.447, M.457, T.459, S.475, E.477, Y.479 No protein-ligand interaction detected (PLIP) PGE.4: 9 residues within 4Å: Chain A: F.96, V.114, V.263, M.325, A.328, Q.329, G.331, E.332, I.333 No protein-ligand interaction detected (PLIP) PGE.5: 8 residues within 4Å: Chain A: V.200, I.203, K.204, K.206, A.354, A.355, S.356, G.357 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.204

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Raj, I. et al., Structural Basis of Egg Coat-Sperm Recognition at Fertilization. Cell (2017)

Release Date

2017-06-14

Peptides

Maltose-binding periplasmic protein,Vitelline envelope sperm lysin receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Maltose-binding periplasmic protein,Vitelline envelope sperm lysin receptor