SMTL ID : 5ijw.1

Glutamate Racemase (MurI) from Mycobacterium smegmatis with bound D-glutamate, 1.8 Angstrom resolution, X-ray diffraction

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-dimer

Ligands

2 x DGL: D-GLUTAMIC ACID(Non-covalent)

DGL.1: 12 residues within 4Å: Chain A: D.14, S.15, P.45, Y.46, G.47, C.77, N.78, T.79, T.122, C.188, T.189, H.190 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.15, A:S.15, A:Y.46, A:G.47, A:N.78, A:T.79, A:T.189, A:T.189, A:T.189 Water bridges: A:G.19 DGL.5: 12 residues within 4Å: Chain B: D.14, S.15, P.45, Y.46, G.47, C.77, N.78, T.79, T.122, C.188, T.189, H.190 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:S.15, B:Y.46, B:G.47, B:N.78, B:T.79, B:T.79, B:T.79, B:T.189, B:T.189, B:T.189 Water bridges: B:G.19, B:T.125

3 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 4 residues within 4Å: Chain A: G.47, T.122, Q.123, P.149 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: P.263 Chain B: R.242 Ligand excluded by PLIP IOD.4: 3 residues within 4Å: Chain A: T.41, A.252, F.253 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Poen, S. et al., Exploring the structure of glutamate racemase from Mycobacterium tuberculosis as a template for anti-mycobacterial drug discovery. Biochem. J. (2016)

Release Date

2016-05-25

Peptides

Glutamate racemase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutamate racemase