SMTL ID : 5iks.1

Wild-type sperm whale myoglobin with a Fe-phenyl moiety

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

monomer

Ligands

1 x 6CO: [3,3'-(7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~)di(propanoato)(2-)](phenyl)iron(Non-covalent)

6CO.1: 17 residues within 4Å: Chain A: L.29, T.39, K.42, F.43, R.45, H.64, T.67, V.68, A.71, L.89, S.92, H.93, H.97, I.99, Y.103, L.104, F.138 25 PLIP interactions: 25 interactions with chain A, Hydrophobic interactions: A:L.29, A:F.43, A:F.43, A:F.43, A:F.43, A:T.67, A:V.68, A:V.68, A:A.71, A:L.89, A:L.89, A:I.99, A:I.99, A:Y.103, A:Y.103, A:F.138 Hydrogen bonds: A:S.92 Water bridges: A:R.45 Salt bridges: A:R.45, A:H.64, A:H.93, A:H.97 pi-Stacking: A:F.43, A:H.97 Metal complexes: A:H.93

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: T.51, E.52 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.52 Water bridges: A:T.51, A:E.52, A:A.53

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: S.3, E.4, G.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.5 Water bridges: A:E.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, B. et al., Organometallic myoglobins: Formation of Fe-carbon bonds and distal pocket effects on aryl ligand conformations. J. Inorg. Biochem. (2016)

Release Date

2016-09-21

Peptides

Myoglobin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Myoglobin

Related Entries With Identical Sequence