SMTL ID : 5ile.1

H64A sperm whale myoglobin with a Fe-tolyl moiety

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

monomer

Ligands

1 x 6CQ: [3,3'-(7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~)di(propanoato)(2-)](3-methylphenyl)iron(Non-covalent)

6CQ.1: 19 residues within 4Å: Chain A: L.30, T.40, K.43, F.44, R.46, A.65, T.68, V.69, A.72, L.73, L.90, S.93, H.94, H.98, I.100, Y.104, L.105, I.108, F.139 21 PLIP interactions: 21 interactions with chain A, Hydrophobic interactions: A:L.30, A:F.44, A:F.44, A:A.65, A:T.68, A:V.69, A:V.69, A:L.90, A:L.90, A:I.100, A:Y.104, A:I.108, A:I.108, A:F.139 Hydrogen bonds: A:S.93 Salt bridges: A:R.46, A:H.94, A:H.98 pi-Stacking: A:F.44, A:H.98 Metal complexes: A:H.94

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: T.52, E.53, A.54 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.53, A:A.54 SO4.3: 2 residues within 4Å: Chain A: S.4, G.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.4, A:S.4, A:G.6 SO4.4: 1 residues within 4Å: Chain A: R.32 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.32 SO4.5: 3 residues within 4Å: Chain A: Q.27, K.57, K.63 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.27 Water bridges: A:K.63 Salt bridges: A:K.63 SO4.6: 2 residues within 4Å: Chain A: A.16, K.17 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.17 SO4.7: 3 residues within 4Å: Chain A: G.125, A.126, D.127 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.126, A:D.127 Water bridges: A:G.125, A:G.125, A:A.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, B. et al., Organometallic myoglobins: Formation of Fe-carbon bonds and distal pocket effects on aryl ligand conformations. J. Inorg. Biochem. (2016)

Release Date

2016-09-21

Peptides

Myoglobin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Myoglobin

Related Entries With Identical Sequence