SMTL ID : 5ilo.1

Crystal structure of photoreceptor dehydrogenase from Drosophila melanogaster

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.71 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 26 residues within 4Å: Chain A: G.22, G.25, G.26, I.27, D.47, L.48, Q.49, M.72, D.73, V.74, V.100, A.101, G.102, I.103, R.111, V.115, M.145, S.147, Y.160, K.164, P.192, G.193, T.195, T.197, M.199, F.200 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:G.25, A:I.27, A:L.48, A:Q.49, A:D.73, A:V.74, A:V.100, A:G.102, A:Y.160, A:K.164, A:G.193, A:T.197 Water bridges: A:G.28, A:D.198, A:D.198 NAD.2: 26 residues within 4Å: Chain B: G.22, G.25, G.26, I.27, D.47, L.48, M.72, D.73, V.74, V.100, A.101, G.102, I.103, R.111, V.115, M.145, S.146, S.147, Y.160, K.164, P.192, G.193, T.195, T.197, M.199, F.200 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:T.197 Hydrogen bonds: B:G.25, B:I.27, B:L.48, B:Q.49, B:D.73, B:D.73, B:V.74, B:V.100, B:G.102, B:Y.160, B:K.164, B:K.164, B:G.193, B:T.197 Water bridges: B:G.28, B:T.197, B:D.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hofmann, L. et al., Structural Insights into the Drosophila melanogaster Retinol Dehydrogenase, a Member of the Short-Chain Dehydrogenase/Reductase Family. Biochemistry (2016)

Release Date

2016-11-16

Peptides

Photoreceptor dehydrogenase, isoform C: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Photoreceptor dehydrogenase, isoform C

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