- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.46 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x POP: PYROPHOSPHATE 2-(Non-covalent)
POP.1: 13 residues within 4Å:- Chain A: F.81, D.84, R.169, N.213, S.217, K.220, E.221, R.308, Y.309
- Ligands: MG.2, MG.3, MG.4, JF1.5
18 PLIP interactions:18 interactions with chain A- Hydrogen bonds: A:D.84, A:N.213, A:S.217, A:Y.309
- Water bridges: A:D.84, A:D.84, A:D.84, A:R.169, A:R.169, A:D.172, A:D.172, A:D.214, A:K.220, A:K.220, A:K.220
- Salt bridges: A:R.169, A:K.220, A:R.308
POP.7: 13 residues within 4Å:- Chain B: F.81, D.84, R.169, N.213, S.217, K.220, E.221, R.308, Y.309
- Ligands: MG.8, MG.9, MG.10, JF1.11
13 PLIP interactions:13 interactions with chain B- Hydrogen bonds: B:N.213, B:S.217, B:E.221, B:Y.309
- Water bridges: B:R.169, B:R.169, B:R.169, B:K.220, B:K.220, B:R.308
- Salt bridges: B:R.169, B:K.220, B:R.308
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 3 residues within 4Å:- Chain A: D.84
- Ligands: POP.1, MG.3
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:D.84, H2O.1, H2O.4, H2O.6, H2O.7
MG.3: 4 residues within 4Å:- Chain A: D.84, E.88
- Ligands: POP.1, MG.2
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.84, H2O.2, H2O.4, H2O.7
MG.4: 4 residues within 4Å:- Chain A: N.213, S.217, E.221
- Ligands: POP.1
4 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions, 1 Ligand-Ligand interactions- Metal complexes: A:S.217, A:E.221, H2O.1, POP.1
MG.8: 3 residues within 4Å:- Chain B: D.84
- Ligands: POP.7, MG.9
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.84, H2O.14, H2O.14, H2O.16
MG.9: 5 residues within 4Å:- Chain B: D.84, E.88, K.220
- Ligands: POP.7, MG.8
3 PLIP interactions:1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.84, H2O.11, H2O.15
MG.10: 5 residues within 4Å:- Chain B: N.213, D.214, S.217, E.221
- Ligands: POP.7
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:S.217, B:E.221, H2O.12
- 2 x JF1: (1S,5S,8S,9aR)-1,9a-dimethyl-8-(prop-1-en-2-yl)octahydro-2H-quinolizinium(Non-covalent)
JF1.5: 13 residues within 4Å:- Chain A: V.57, Y.61, L.77, L.80, F.81, D.84, F.147, D.172, V.173, N.213, N.299, W.302
- Ligands: POP.1
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:V.57, A:Y.61, A:L.77, A:F.81, A:F.81, A:D.84, A:F.147, A:W.302
JF1.11: 11 residues within 4Å:- Chain B: V.57, Y.61, F.81, F.147, D.172, V.173, L.177, N.213, N.299, W.302
- Ligands: POP.7
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:V.57, B:Y.61, B:F.81, B:F.81, B:F.147, B:L.177, B:W.302
- 1 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 3 residues within 4Å:- Chain A: R.107, E.142, R.149
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.107, A:R.149, A:R.149
- Water bridges: A:R.107
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, M. et al., Probing the Role of Active Site Water in the Sesquiterpene Cyclization Reaction Catalyzed by Aristolochene Synthase. Biochemistry (2016)
- Release Date
- 2016-05-25
- Peptides
- Aristolochene synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.46 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x POP: PYROPHOSPHATE 2-(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 2 x JF1: (1S,5S,8S,9aR)-1,9a-dimethyl-8-(prop-1-en-2-yl)octahydro-2H-quinolizinium(Non-covalent)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, M. et al., Probing the Role of Active Site Water in the Sesquiterpene Cyclization Reaction Catalyzed by Aristolochene Synthase. Biochemistry (2016)
- Release Date
- 2016-05-25
- Peptides
- Aristolochene synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B