SMTL ID : 5imt.2 (1 other biounit)

Toxin receptor complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 11 residues within 4Å: Chain A: W.439, E.441, S.456, W.457, S.458, L.472, R.473, F.474, K.475, N.477, V.478 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.458, A:K.475

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: A.206, M.208, Q.257, I.374, Q.375, S.378 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.257 SO4.3: 3 residues within 4Å: Chain A: F.240, S.241, H.244 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.244 SO4.11: 5 residues within 4Å: Chain A: D.445 Chain B: K.66, C.69, F.71, Q.74 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:D.445, B:Q.74 Water bridges: B:K.66, B:K.66 Salt bridges: B:K.66

7 x ZN: ZINC ION(Non-covalent)

ZN.4: 2 residues within 4Å: Chain A: E.447 Chain B: K.66 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.447, A:E.447, H2O.1 ZN.5: 4 residues within 4Å: Chain A: H.98, G.101, D.420, R.473 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.420, H2O.3, H2O.4, H2O.4 ZN.6: 4 residues within 4Å: Chain A: H.83, Q.140, E.144, A.227 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.83, A:E.144, H2O.2, H2O.4 ZN.7: 4 residues within 4Å: Chain A: R.94, A.96, H.444, E.450 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.444, A:E.450, A:E.450, H2O.3, H2O.4 ZN.8: 1 residues within 4Å: Chain A: H.467 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.467 ZN.12: 2 residues within 4Å: Chain B: E.73, N.77 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.73, H2O.5 ZN.13: 3 residues within 4Å: Chain B: K.41, H.44, R.53 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.44, H2O.5

2 x CU: COPPER (II) ION(Non-covalent)

CU.9: 7 residues within 4Å: Chain A: K.119, N.299, V.300, S.301, S.390, Y.391, T.392 No protein-ligand interaction detected (PLIP) CU.10: 5 residues within 4Å: Chain A: R.99, E.102, K.315, S.417, K.419 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.102, A:E.102, H2O.1, H2O.2, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lawrence, S.L. et al., Structural Basis for Receptor Recognition by the Human CD59-Responsive Cholesterol-Dependent Cytolysins. Structure (2016)

Release Date

2016-08-24

Peptides

Intermedilysin: A
CD59 glycoprotein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Intermedilysin

CD59 glycoprotein

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