SMTL ID : 5inm.5 (4 other biounits)

Mouse Tdp2 protein, apo state with variable DNA-binding grasp conformations

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.162, D.163, Q.164, R.213 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.163, A:Q.164 Salt bridges: A:R.213

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: D.18, E.48 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.18, A:E.48, A:E.48, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schellenberg, M.J. et al., Reversal of DNA damage induced Topoisomerase 2 DNA-protein crosslinks by Tdp2. Nucleic Acids Res. (2016)

Release Date

2016-04-27

Peptides

Tyrosyl-DNA phosphodiesterase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

Tyrosyl-DNA phosphodiesterase 2

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