SMTL ID : 5inn.1 (4 other biounits)

Mouse Tdp2 D358N protein, apo state with increased disorder amongst variable DNA-binding grasp conformations

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: L.161, R.162, D.163, Q.164, E.165, R.213 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.164, A:E.165 Salt bridges: A:R.213

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: F.95, P.96, N.97, E.132, R.135, T.139 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.97, A:R.135, A:T.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schellenberg, M.J. et al., Reversal of DNA damage induced Topoisomerase 2 DNA-protein crosslinks by Tdp2. Nucleic Acids Res. (2016)

Release Date

2016-04-27

Peptides

Tyrosyl-DNA phosphodiesterase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosyl-DNA phosphodiesterase 2

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