SMTL ID : 5io8.1

Salmonella Typhimurium VirG-like (STV) protein at 2.19 Angstrom resolution solved by Iodine SAD.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

homo-dimer

Ligands

14 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 1 residues within 4Å: Chain A: Q.106 Ligand excluded by PLIP IOD.2: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.3: 4 residues within 4Å: Chain A: L.12, K.33, Q.37 Ligands: IOD.4 Ligand excluded by PLIP IOD.4: 3 residues within 4Å: Chain A: A.14, K.33 Ligands: IOD.3 Ligand excluded by PLIP IOD.5: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.6: 2 residues within 4Å: Chain A: G.54, L.56 Ligand excluded by PLIP IOD.7: 1 residues within 4Å: Chain A: Q.82 Ligand excluded by PLIP IOD.15: 2 residues within 4Å: Chain B: Q.82, Y.86 Ligand excluded by PLIP IOD.16: 2 residues within 4Å: Chain B: P.101, E.102 Ligand excluded by PLIP IOD.17: 3 residues within 4Å: Chain B: A.55, L.56, Q.73 Ligand excluded by PLIP IOD.18: 2 residues within 4Å: Chain B: I.29, K.33 Ligand excluded by PLIP IOD.19: 2 residues within 4Å: Chain B: E.102, Q.103 Ligand excluded by PLIP IOD.20: 2 residues within 4Å: Chain B: D.27, R.31 Ligand excluded by PLIP IOD.21: 2 residues within 4Å: Chain B: R.85, R.88 Ligand excluded by PLIP

5 x NA: SODIUM ION(Non-functional Binders)

NA.8: 4 residues within 4Å: Chain A: S.78 Chain B: E.81, R.85 Ligands: NA.10 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.78, B:R.85 NA.9: 1 residues within 4Å: Chain A: T.41 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.41 Water bridges: A:T.41 NA.10: 5 residues within 4Å: Chain A: S.78, E.81, R.85 Chain B: S.78 Ligands: NA.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.78, A:R.85 NA.11: 1 residues within 4Å: Chain A: H.21 No protein-ligand interaction detected (PLIP) NA.22: 2 residues within 4Å: Chain B: A.14, I.29 1 PLIP interactions: 1 interactions with chain B Water bridges: B:L.24

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.12: 4 residues within 4Å: Chain A: P.13, A.14, I.29, K.33 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.13 Salt bridges: A:K.33 PO4.13: 4 residues within 4Å: Chain A: M.48, K.49, Q.73, A.76 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:M.48, A:K.49, A:Q.73, A:Q.73 PO4.14: 1 residues within 4Å: Chain A: E.102 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pandey, N.K. et al., Salmonella Typhimurium VirG-like (STV) protein at at 2.19 Angstrom resolution by SAD. To Be Published

Release Date

2017-03-15

Peptides

VirG-like protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

VirG-like protein

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