SMTL ID : 5iou.1

Cryo-EM structure of GluN1/GluN2B NMDA receptor in the glutamate/glycine-bound conformation

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 7.00 Å

Oligo State

hetero-2-2-mer

Ligands

2 x GLY: GLYCINE(Non-covalent)

GLY.1: 4 residues within 4Å: Chain A: P.492, L.493, T.494, S.656 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.492, A:T.494 GLY.2: 4 residues within 4Å: Chain B: P.492, L.493, T.494, S.656 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:P.492, B:T.494, B:S.656

2 x GLU: GLUTAMIC ACID(Non-covalent)

GLU.3: 4 residues within 4Å: Chain C: S.505, G.672, S.673, D.715 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Ligand interactions Hydrophobic interactions: C:D.715 Hydrogen bonds: C:S.673, C:D.715, E.3, E.3 GLU.4: 4 residues within 4Å: Chain D: S.505, G.672, S.673, T.674 4 PLIP interactions: 2 interactions with chain D, 2 Ligand-Ligand interactions Hydrogen bonds: D:S.673, D:T.674, E.4, E.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, S. et al., Mechanism of NMDA Receptor Inhibition and Activation. Cell (2016)

Release Date

2016-04-20

Peptides

N-methyl-D-aspartate receptor subunit NR1-8a: AB
Ionotropic glutamate receptor subunit NR2B: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

D
D

Membrane

We predict this structure to be a membrane protein.
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N-methyl-D-aspartate receptor subunit NR1-8a

Ionotropic glutamate receptor subunit NR2B

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