SMTL ID : 5ipf.1

Crystal structure of Hypoxanthine-guanine phosphoribosyltransferase from Schistosoma mansoni in complex with IMP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-tetramer

Ligands

4 x IMP: INOSINIC ACID(Non-covalent)

IMP.1: 12 residues within 4Å: Chain A: E.159, D.160, I.161, D.163, T.164, G.165, K.166, T.167, K.191, F.212, V.213, D.219 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:E.159, A:E.159, A:D.163, A:T.164, A:T.164, A:T.164, A:G.165, A:K.166, A:T.167, A:T.167, A:K.191, A:V.213, A:V.213 Water bridges: A:I.168, A:I.168 IMP.2: 13 residues within 4Å: Chain B: E.159, D.160, I.161, I.162, D.163, T.164, G.165, K.166, T.167, K.191, F.212, V.213, D.219 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:E.159, B:E.159, B:D.160, B:D.163, B:T.164, B:T.164, B:T.164, B:T.164, B:G.165, B:K.166, B:T.167, B:K.191, B:V.213, B:V.213 pi-Stacking: B:F.212 IMP.3: 10 residues within 4Å: Chain C: D.160, I.161, I.162, T.164, G.165, K.166, T.167, F.212, V.213, D.219 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:D.160, C:T.164, C:T.164, C:T.164, C:G.165, C:K.166, C:T.167, C:V.213, C:V.213 pi-Stacking: C:F.212 IMP.4: 13 residues within 4Å: Chain D: D.160, I.161, I.162, D.163, T.164, G.165, K.166, T.167, K.191, R.211, F.212, V.213, D.219 13 PLIP interactions: 13 interactions with chain D Hydrogen bonds: D:D.160, D:D.163, D:T.164, D:T.164, D:T.164, D:G.165, D:K.166, D:T.167, D:T.167, D:K.191, D:V.213, D:V.213 pi-Stacking: D:F.212

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Romanello, L. et al., In vitro and in vivo characterization of the multiple isoforms of Schistosoma mansoni hypoxanthine-guanine phosphoribosyltransferases. Mol. Biochem. Parasitol. (2019)

Release Date

2017-03-15

Peptides

Hypoxanthine-guanine phosphoribosyltransferase (HGPRT): ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Hypoxanthine-guanine phosphoribosyltransferase (HGPRT)