SMTL ID : 5iq6.1

Crystal structure of Dengue virus serotype 3 RNA dependent RNA polymerase bound to HeE1-2Tyr, a new pyridobenzothizole inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.440, H.442, C.456, C.575 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.440, A:H.442, A:C.456, A:C.575 ZN.2: 4 residues within 4Å: Chain A: E.165, H.169, C.174, C.177 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.165, A:H.169, A:C.174, A:C.177

1 x 6CJ: N-[8-(cyclohexyloxy)-1-oxo-2-phenyl-1H-pyrido[2,1-b][1,3]benzothiazole-4-carbonyl]-L-tyrosine(Non-covalent)

6CJ.3: 9 residues within 4Å: Chain A: W.205, N.220, G.329, Q.330, V.331, G.332, T.333, Y.334, W.523 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.334 pi-Stacking: A:W.523

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tarantino, D. et al., Targeting flavivirus RNA dependent RNA polymerase through a pyridobenzothiazole inhibitor. Antiviral Res. (2016)

Release Date

2016-10-05

Peptides

RNA dependent RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA dependent RNA polymerase