- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x B9P: 1-biotinylpyrene(Non-covalent)
B9P.2: 18 residues within 4Å:- Chain A: N.12, L.14, S.16, Y.33, T.35, V.37, T.38, A.39, T.40, W.70, F.72, S.73, S.75, T.77, W.97, S.101, N.118
- Chain C: W.110
12 PLIP interactions:12 interactions with chain A- Hydrophobic interactions: A:A.39, A:T.40, A:W.70, A:F.72
- Hydrogen bonds: A:N.12, A:S.16, A:T.35, A:T.35, A:T.38, A:A.39, A:N.118, A:N.118
B9P.4: 19 residues within 4Å:- Chain B: N.12, L.14, S.16, Y.33, T.35, V.37, T.38, A.39, T.40, W.70, F.72, S.73, S.75, T.77, F.79, W.97, S.101, N.118
- Chain D: W.110
12 PLIP interactions:12 interactions with chain B- Hydrophobic interactions: B:A.39, B:T.40, B:W.70, B:F.72, B:F.72
- Hydrogen bonds: B:N.12, B:S.16, B:Y.33, B:T.35, B:A.39, B:N.118, B:N.118
B9P.6: 19 residues within 4Å:- Chain A: W.110
- Chain C: N.12, L.14, S.16, Y.33, T.35, V.37, T.38, A.39, T.40, N.42, W.70, F.72, S.73, S.75, T.77, W.97, S.101, N.118
12 PLIP interactions:12 interactions with chain C- Hydrophobic interactions: C:A.39, C:T.40, C:W.70, C:F.72, C:F.72
- Hydrogen bonds: C:N.12, C:S.16, C:T.35, C:T.35, C:T.38, C:A.39, C:N.118
B9P.8: 20 residues within 4Å:- Chain B: W.110
- Chain D: N.12, L.14, S.16, Y.33, T.35, V.37, T.38, A.39, T.40, W.70, F.72, S.73, S.75, T.77, W.97, L.99, S.101, R.114, N.118
12 PLIP interactions:12 interactions with chain D- Hydrophobic interactions: D:A.39, D:T.40, D:W.70, D:F.72, D:F.72, D:L.99
- Hydrogen bonds: D:N.12, D:S.16, D:Y.33, D:T.35, D:A.39, D:N.118
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Strzelczyk, P. et al., Structural Characterization of the Avidin Interactions with Fluorescent Pyrene-Conjugates: 1-Biotinylpyrene and 1-Desthiobiotinylpyrene. Molecules (2016)
- Release Date
- 2016-10-12
- Peptides
- Avidin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x B9P: 1-biotinylpyrene(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Strzelczyk, P. et al., Structural Characterization of the Avidin Interactions with Fluorescent Pyrene-Conjugates: 1-Biotinylpyrene and 1-Desthiobiotinylpyrene. Molecules (2016)
- Release Date
- 2016-10-12
- Peptides
- Avidin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D