SMTL ID : 5iso.2 (1 other biounit)

STRUCTURE OF FULL LENGTH HUMAN AMPK (NON-PHOSPHORYLATED AT T-LOOP) IN COMPLEX WITH A SMALL MOLECULE ACTIVATOR, A BENZIMIDAZOLE DERIVATIVE (991)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.63 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x STU: STAUROSPORINE(Non-covalent)

STU.1: 19 residues within 4Å: Chain A: L.22, G.23, V.24, G.25, V.30, A.43, K.45, I.77, M.93, E.94, Y.95, V.96, G.99, E.100, E.143, N.144, L.146, A.156, D.157 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.95, A:E.100, A:L.146, A:D.157 Hydrogen bonds: A:V.96, A:E.100, A:E.143

1 x 992: 5-[[6-chloranyl-5-(1-methylindol-5-yl)-1H-benzimidazol-2-yl]oxy]-2-methyl-benzoic acid(Non-covalent)

992.2: 18 residues within 4Å: Chain A: V.11, L.18, G.28, K.29, K.31, I.46, N.48, K.51, D.88, F.90 Chain B: V.97, R.99, T.122, R.123, S.124, N.127, V.129, I.131 13 PLIP interactions: 3 interactions with chain B, 10 interactions with chain A Hydrophobic interactions: B:N.127, B:V.129, A:V.11, A:L.18, A:K.29, A:K.31, A:I.46 pi-Cation interactions: B:R.99, A:K.31, A:K.31 Hydrogen bonds: A:D.88 Salt bridges: A:K.29, A:K.51

3 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.3: 11 residues within 4Å: Chain C: M.85, T.87, T.89, D.90, P.128, L.129, V.130, I.150, H.151, R.152, P.154 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:T.89, C:D.90, C:V.130, C:H.151, C:R.152, C:R.152 Salt bridges: C:H.151, C:K.243 AMP.4: 17 residues within 4Å: Chain A: P.367, E.368 Chain C: R.70, K.170, I.240, S.242, F.244, D.245, R.269, F.273, G.275, V.276, L.277, V.297, H.298, R.299, L.300 13 PLIP interactions: 11 interactions with chain C, 2 interactions with chain A Hydrogen bonds: C:S.242, C:D.245, C:R.269, C:R.269, C:L.277, C:L.277, C:H.298, C:R.299, A:E.368, A:E.368 Salt bridges: C:R.70, C:K.170, C:R.299 AMP.5: 14 residues within 4Å: Chain C: H.151, T.200, N.203, I.204, A.205, V.225, S.226, A.227, P.229, H.298, I.312, S.314, S.316, D.317 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:T.200, C:A.205, C:A.205, C:S.226, C:S.226, C:S.314, C:S.316, C:D.317 Salt bridges: C:H.151, C:H.298

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiao, B. et al., STRUCTURE OF FULL LENGTH HUMAN AMPK (NON-PHOSPHORYLATED AT T-LOOP) IN COMPLEX WITH A SMALL MOLECULE ACTIVATOR, A BENZIMIDAZOLE DERIVATIVE (991). To Be Published

Release Date

2017-03-29

Peptides

5'-AMP-activated protein kinase catalytic subunit alpha-2: A
5'-AMP-activated protein kinase subunit beta-1: B
5'-AMP-activated protein kinase subunit gamma-1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
F

5'-AMP-activated protein kinase catalytic subunit alpha-2

5'-AMP-activated protein kinase subunit beta-1

5'-AMP-activated protein kinase subunit gamma-1

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