- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x RET: RETINAL(Covalent)
- 3 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)
OLC.2: 14 residues within 4Å:- Chain A: M.31, I.35, G.38, L.39, K.47, Y.50, V.51, I.54, A.58, A.61
- Chain B: I.122, F.125, I.148, F.155
9 PLIP interactions:5 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:I.54, A:A.58, A:A.61, B:F.125, B:F.125, B:I.148, B:F.155
- Hydrogen bonds: A:I.35
- Salt bridges: A:K.47
OLC.4: 10 residues within 4Å:- Chain A: T.150, M.153, V.154, L.157, Y.158, V.161, A.162, L.187, A.191, V.195
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:T.150, A:V.154, A:L.157, A:Y.158, A:L.187, A:A.191, A:V.195
OLC.12: 16 residues within 4Å:- Chain B: P.44, K.47, E.48, V.51, L.55, I.59, F.96
- Chain C: R.114, D.115, G.117, A.118, G.121, A.124, F.125, V.128, Y.159
12 PLIP interactions:7 interactions with chain B, 5 interactions with chain C- Hydrophobic interactions: B:V.51, B:L.55, B:I.59, B:I.59, B:I.59, B:F.96, C:A.124, C:V.128, C:V.128
- Hydrogen bonds: B:E.48, C:D.115
- Water bridges: C:D.115
- 7 x OLB: (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)
OLB.3: 11 residues within 4Å:- Chain A: L.95, F.96, P.99, L.100, L.103, L.107, A.111, Q.113, V.120
- Chain C: F.96
- Ligands: OLB.5
8 PLIP interactions:7 interactions with chain A, 1 interactions with chain C- Hydrophobic interactions: A:L.95, A:F.96, A:P.99, A:L.100, A:L.103, A:Q.113, A:V.120, C:F.96
OLB.5: 14 residues within 4Å:- Chain A: E.48, L.55, I.59, F.96, L.100, L.103, L.107
- Chain B: Q.113, G.117, G.121, A.124, F.125, V.128
- Ligands: OLB.3
7 PLIP interactions:2 interactions with chain B, 5 interactions with chain A- Hydrophobic interactions: B:V.128, A:L.55, A:I.59, A:I.59, A:F.96
- Water bridges: B:R.114
- Hydrogen bonds: A:E.48
OLB.6: 10 residues within 4Å:- Chain A: F.96
- Chain B: L.95, F.96, P.99, L.100, L.103, Q.113, I.116, G.117, V.128
10 PLIP interactions:8 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:L.95, B:L.95, B:L.95, B:F.96, B:F.96, B:L.100, B:L.103, B:V.128, A:F.96, A:F.96
OLB.8: 8 residues within 4Å:- Chain B: M.153, V.154, L.157, Y.158, V.161, A.162, A.191, V.195
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:L.157, B:Y.158, B:A.191, B:V.195
OLB.9: 15 residues within 4Å:- Chain B: M.31, I.35, G.38, L.39, K.47, Y.50, V.51, I.54, L.55, A.58, A.61
- Chain C: I.122, F.125, I.148, F.155
14 PLIP interactions:8 interactions with chain B, 6 interactions with chain C- Hydrophobic interactions: B:I.54, B:L.55, B:A.58, B:A.61, C:I.122, C:I.122, C:F.125, C:I.148, C:I.148, C:F.155
- Hydrogen bonds: B:I.35, B:G.38, B:K.47
- Salt bridges: B:K.47
OLB.11: 13 residues within 4Å:- Chain A: Q.113, R.114, G.117, A.118, G.121, F.125, V.128
- Chain C: E.48, L.55, I.59, A.92, F.96, L.100
10 PLIP interactions:3 interactions with chain A, 7 interactions with chain C- Hydrophobic interactions: A:V.128, C:L.55, C:I.59, C:A.92, C:F.96, C:F.96, C:L.100
- Hydrogen bonds: A:Q.113, C:E.48
- Water bridges: A:A.118
OLB.13: 16 residues within 4Å:- Chain A: I.122, F.125, I.148, S.152, F.155
- Chain C: T.24, M.31, I.35, G.38, L.39, K.47, I.54, L.55, A.58, A.61, L.65
13 PLIP interactions:8 interactions with chain C, 5 interactions with chain A- Hydrophobic interactions: C:T.24, C:L.55, C:A.58, C:A.61, C:L.65, A:I.122, A:F.125, A:F.125, A:I.148, A:F.155
- Hydrogen bonds: C:I.35, C:G.38
- Salt bridges: C:K.47
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Broecker, J. et al., Crystallogenesis of Membrane Proteins Mediated by Polymer-Bounded Lipid Nanodiscs. Structure (2017)
- Release Date
- 2017-01-25
- Peptides
- Bacteriorhodopsin-I: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x RET: RETINAL(Covalent)
- 3 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)
- 7 x OLB: (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Broecker, J. et al., Crystallogenesis of Membrane Proteins Mediated by Polymer-Bounded Lipid Nanodiscs. Structure (2017)
- Release Date
- 2017-01-25
- Peptides
- Bacteriorhodopsin-I: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C - Membrane
-
We predict this structure to be a membrane protein.