SMTL ID : 5itv.3 (2 other biounits)

Crystal structure of Bacillus subtilis BacC Dihydroanticapsin 7-dehydrogenase in complex with NADH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

homo-tetramer

Ligands

4 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 27 residues within 4Å: Chain A: G.14, A.16, S.17, G.18, I.19, D.38, I.39, T.61, D.62, I.63, N.89, A.90, G.91, I.92, V.112, T.139, C.140, S.141, Y.154, K.158, P.184, G.185, I.186, I.187, T.189, L.191, N.192 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:P.184 Hydrogen bonds: A:A.16, A:S.17, A:S.17, A:S.17, A:I.19, A:I.39, A:D.62, A:I.63, A:N.89, A:N.89, A:K.158, A:I.187, A:I.187, A:T.189, A:T.189 Water bridges: A:G.20, A:G.20 NAI.2: 26 residues within 4Å: Chain B: G.14, S.17, G.18, I.19, D.38, I.39, D.40, T.61, D.62, I.63, N.89, A.90, G.91, V.112, T.139, C.140, S.141, Y.154, K.158, P.184, G.185, I.186, I.187, T.189, L.191, N.192 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:P.184, B:P.184 Hydrogen bonds: B:S.17, B:S.17, B:I.19, B:I.39, B:D.62, B:I.63, B:N.89, B:N.89, B:K.158, B:I.187, B:I.187, B:T.189, B:T.189, B:N.192 Water bridges: B:G.20, B:G.20 NAI.3: 28 residues within 4Å: Chain C: G.14, S.17, G.18, I.19, G.20, D.38, I.39, T.61, D.62, I.63, T.64, N.89, A.90, G.91, I.92, V.112, T.139, C.140, S.141, Y.154, K.158, P.184, G.185, I.186, I.187, T.189, L.191, N.192 18 PLIP interactions: 18 interactions with chain C Hydrophobic interactions: C:P.184, C:P.184 Hydrogen bonds: C:S.17, C:S.17, C:S.17, C:S.17, C:I.19, C:G.20, C:I.39, C:D.62, C:I.63, C:N.89, C:N.89, C:Y.154, C:K.158, C:I.187, C:I.187, C:N.192 NAI.4: 23 residues within 4Å: Chain D: G.14, S.17, G.18, I.19, D.38, I.39, T.61, D.62, I.63, N.89, A.90, G.91, V.112, T.139, C.140, S.141, Y.154, K.158, P.184, G.185, I.186, I.187, T.189 17 PLIP interactions: 17 interactions with chain D Hydrophobic interactions: D:P.184 Hydrogen bonds: D:S.17, D:S.17, D:S.17, D:I.19, D:G.20, D:I.39, D:D.62, D:D.62, D:I.63, D:N.89, D:Y.154, D:K.158, D:I.187, D:I.187 Water bridges: D:N.89, D:N.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Perinbam, K. et al., Probing the influence of non-covalent contact networks identified by charge density analysis on the oxidoreductase BacC. Protein Eng. Des. Sel. (2017)

Release Date

2017-02-22

Peptides

Dihydroanticapsin 7-dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Dihydroanticapsin 7-dehydrogenase

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