SMTL ID : 5iuw.1

Crystal Structure of Indole-3-acetaldehyde Dehydrogenase in complexed with NAD+ and IAA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 28 residues within 4Å: Chain A: I.164, V.165, P.166, W.167, N.168, M.173, K.191, S.193, E.194, G.224, G.228, K.229, F.242, T.243, G.244, S.245, I.248, L.252, Y.255, E.267, A.268, G.269, C.302, E.401, F.403, L.429, F.467 Ligands: IAC.2 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:T.243 Hydrogen bonds: A:V.165, A:V.165, A:W.167, A:K.191, A:E.194, A:S.245, A:S.245, A:Y.255, A:Y.255, A:E.267, A:E.267, A:E.401 Water bridges: A:G.224, A:T.246 NAD.3: 27 residues within 4Å: Chain B: I.164, V.165, P.166, W.167, N.168, K.191, S.193, E.194, G.224, G.228, K.229, F.242, T.243, G.244, S.245, I.248, L.252, Y.255, E.267, A.268, G.269, C.302, E.401, F.403, L.429, F.467 Ligands: IAC.4 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:P.166, B:T.243 Hydrogen bonds: B:V.165, B:W.167, B:E.194, B:S.245, B:Y.255, B:Y.255, B:E.267, B:E.267, B:E.401 Water bridges: B:S.193, B:T.246 NAD.5: 28 residues within 4Å: Chain C: I.164, V.165, P.166, W.167, N.168, M.173, K.191, S.193, E.194, G.224, G.228, K.229, F.242, T.243, G.244, S.245, I.248, L.252, Y.255, E.267, A.268, G.269, C.302, E.401, F.403, L.429, F.467 Ligands: IAC.6 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:T.243 Hydrogen bonds: C:V.165, C:V.165, C:W.167, C:K.191, C:E.194, C:S.245, C:S.245, C:Y.255, C:E.267, C:E.401 Water bridges: C:G.224, C:T.246 NAD.7: 27 residues within 4Å: Chain D: I.164, V.165, P.166, W.167, N.168, K.191, S.193, E.194, G.224, G.228, K.229, F.242, T.243, G.244, S.245, I.248, L.252, Y.255, E.267, A.268, G.269, C.302, E.401, F.403, L.429, F.467 Ligands: IAC.8 11 PLIP interactions: 11 interactions with chain D Hydrophobic interactions: D:P.166, D:T.243 Hydrogen bonds: D:V.165, D:W.167, D:E.194, D:S.245, D:Y.255, D:E.267, D:E.401 Water bridges: D:S.193, D:T.246

4 x IAC: 1H-INDOL-3-YLACETIC ACID(Non-covalent)

IAC.2: 11 residues within 4Å: Chain A: V.119, N.168, F.169, M.172, M.173, V.301, C.302, T.303, D.459, F.467 Ligands: NAD.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.119, A:F.169, A:F.169 Hydrogen bonds: A:N.168, A:C.302, A:D.459 IAC.4: 10 residues within 4Å: Chain B: N.168, F.169, M.173, W.176, V.301, C.302, T.303, D.459, F.467 Ligands: NAD.3 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:F.467 Hydrogen bonds: B:N.168, B:C.302 pi-Stacking: B:F.169, B:F.169 IAC.6: 11 residues within 4Å: Chain C: V.119, N.168, F.169, M.172, M.173, V.301, C.302, T.303, D.459, F.467 Ligands: NAD.5 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:V.119, C:F.169, C:F.169 Hydrogen bonds: C:N.168, C:C.302, C:D.459 IAC.8: 10 residues within 4Å: Chain D: N.168, F.169, M.173, W.176, V.301, C.302, T.303, D.459, F.467 Ligands: NAD.7 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:F.467 Hydrogen bonds: D:N.168, D:C.302 pi-Stacking: D:F.169, D:F.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McClerklin, S.A. et al., Indole-3-acetaldehyde dehydrogenase-dependent auxin synthesis contributes to virulence of Pseudomonas syringae strain DC3000. PLoS Pathog. (2018)

Release Date

2017-10-25

Peptides

Aldehyde dehydrogenase family protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Aldehyde dehydrogenase family protein

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