SMTL ID : 5iw5.1 (1 other biounit)

Crystal structure of E. coli NudC in complex with NMN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.99, C.102, C.117, C.120 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.99, A:C.102, A:C.117, A:C.120 ZN.3: 4 residues within 4Å: Chain B: C.99, C.102, C.117, C.120 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.99, B:C.102, B:C.117, B:C.120

2 x NMN: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE(Non-covalent)

NMN.2: 11 residues within 4Å: Chain A: R.70, C.131, W.195, P.198, S.200, M.202, P.236, P.237, T.240, V.241, A.242 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:T.240, A:A.242 Hydrogen bonds: A:R.70, A:R.70, A:S.200, A:T.240, A:T.240 NMN.4: 11 residues within 4Å: Chain B: R.70, C.131, W.195, P.198, S.200, M.202, P.236, P.237, T.240, V.241, A.242 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:T.240, B:A.242 Hydrogen bonds: B:R.70, B:R.70, B:S.200, B:T.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hofer, K. et al., Structure and function of the bacterial decapping enzyme NudC. Nat.Chem.Biol. (2016)

Release Date

2016-07-13

Peptides

NADH pyrophosphatase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

NADH pyrophosphatase

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