SMTL ID : 5iw6.1

anti-CD20 monoclonal antibody Fc fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG- NAG- BMA- BMA- NAG- GAL- MAN- NAG: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-beta-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-BMA-NAG-GAL-MAN-NAG.1: 16 residues within 4Å: Chain A: F.6, F.8, P.9, P.10, K.11, E.23, T.25, V.29, D.30, Q.60, N.62, T.64, R.66, K.99 Ligands: NAG-NAG-BMA-BMA-NAG-GAL-MAN-NAG.2, NAG-NAG-BMA-BMA-NAG-GAL-MAN-NAG.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.8, A:E.23, A:E.23, A:T.25, A:T.25 Water bridges: A:K.11, A:E.23 Hydrophobic interactions: A:F.6 NAG-NAG-BMA-BMA-NAG-GAL-MAN-NAG.2: 13 residues within 4Å: Chain B: F.3, F.5, P.6, P.7, K.8, E.20, T.22, V.24, V.26, D.27, N.59, K.96 Ligands: NAG-NAG-BMA-BMA-NAG-GAL-MAN-NAG.1 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:F.5, B:K.8, B:K.8, B:D.11, B:D.11, B:E.20, B:E.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tang, C. et al., Structure of anti-CD20 monoclonal antibody Fc fragment at 2.34 Angstroms resolution. To Be Published

Release Date

2017-03-29

Peptides

Ig gamma-1 chain C region: A
Ig gamma-1 chain C region: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ig gamma-1 chain C region

Ig gamma-1 chain C region