SMTL ID : 5iwd.1

HCMV DNA polymerase subunit UL44 complex with a small molecule

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.56 Å

Oligo State

homo-dimer

Ligands

6 x 6EV: 5-methylidene-3-(methylsulfanyl)-2-benzothiophen-4(5H)-one(Covalent)

6EV.1: 1 residues within 4Å: Chain A: K.4 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:K.4 6EV.2: 9 residues within 4Å: Chain A: T.41, L.43, I.49, Q.51, K.60, T.79, D.134, I.135, V.136 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.60, A:I.135 6EV.3: 2 residues within 4Å: Chain A: H.185, K.192 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:K.192 6EV.4: 1 residues within 4Å: Chain B: K.4 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:K.4 6EV.5: 9 residues within 4Å: Chain B: T.41, L.43, I.49, Q.51, K.60, T.79, D.134, I.135, V.136 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:K.60, B:I.135 6EV.6: 2 residues within 4Å: Chain B: H.185, K.192 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:K.192

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, H. et al., A Small Covalent Allosteric Inhibitor of Human Cytomegalovirus DNA Polymerase Subunit Interactions. ACS Infect Dis (2017)

Release Date

2016-11-30

Peptides

DNA polymerase processivity factor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

DNA polymerase processivity factor