SMTL ID : 5iwf.1

Linked KDM5A Jmj Domain Bound to the Inhibitor 2-(((2-((2-(dimethylamino)ethyl)(ethyl)amino)-2-oxoethyl)amino)methyl)isonicotinamid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

monomer

Ligands

1 x LQT: 2-[[[2-[2-(dimethylamino)ethyl-ethyl-amino]-2-oxidanylidene-ethyl]amino]methyl]pyridine-4-carboxamide(Non-covalent)

LQT.1: 15 residues within 4Å: Chain A: Y.151, D.154, W.212, Y.214, F.222, H.225, E.227, D.228, K.243, W.245, H.313, A.325, V.326, N.327 Ligands: MN.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.214, A:W.245 Hydrogen bonds: A:Y.151 Salt bridges: A:D.228 pi-Stacking: A:F.222

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 4 residues within 4Å: Chain A: H.225, E.227, H.313 Ligands: LQT.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.225, A:E.227, A:H.313, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Horton, J.R. et al., Structural Basis for KDM5A Histone Lysine Demethylase Inhibition by Diverse Compounds. Cell Chem Biol (2016)

Release Date

2016-07-27

Peptides

Lysine-specific demethylase 5A,Lysine-specific demethylase 5A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysine-specific demethylase 5A,Lysine-specific demethylase 5A

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