SMTL ID : 5ixe.4 (3 other biounits)

1.75A RESOLUTION STRUCTURE OF 5-Fluoroindole BOUND BETA-GLYCOSIDASE (W33G) FROM SULFOLOBUS SOLFATARICUS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-tetramer

Ligands

4 x 14O: 5-fluoro-1H-indole(Non-covalent)

14O.1: 10 residues within 4Å: Chain A: G.33, W.36, V.37, W.151, P.152, G.221, F.222, P.223, W.433, A.434 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.37, A:P.152, A:W.433, A:W.433, A:W.433 pi-Stacking: A:F.222, A:F.222 14O.6: 10 residues within 4Å: Chain B: G.33, W.36, V.37, W.151, P.152, G.221, F.222, P.223, W.433, A.434 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:V.37, B:P.152, B:W.433, B:W.433, B:W.433 pi-Stacking: B:F.222, B:F.222 14O.10: 10 residues within 4Å: Chain C: G.33, W.36, V.37, W.151, P.152, G.221, F.222, P.223, W.433, A.434 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:V.37, C:P.152, C:W.433, C:W.433, C:W.433 pi-Stacking: C:F.222, C:F.222 14O.15: 10 residues within 4Å: Chain D: G.33, W.36, V.37, W.151, P.152, G.221, F.222, P.223, W.433, A.434 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:V.37, D:P.152, D:W.433, D:W.433, D:W.433 pi-Stacking: D:F.222, D:F.222

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 5 residues within 4Å: Chain A: P.89, N.90, E.120, Y.121, N.123 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.89, A:N.123 Hydrogen bonds: A:N.90, A:N.90 MPD.11: 5 residues within 4Å: Chain C: P.89, N.90, E.120, Y.121, N.123 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:P.89, C:N.123 Hydrogen bonds: C:N.90, C:N.90

12 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: N.264, S.265, F.267, R.286 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: R.440, V.446, D.447, Y.448 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: R.295, Y.379 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain B: N.264, S.265, F.267, R.286 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain B: R.295, Y.379 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain B: R.440, V.446, D.447, Y.448 Ligand excluded by PLIP CL.12: 4 residues within 4Å: Chain C: N.264, S.265, F.267, R.286 Ligand excluded by PLIP CL.13: 4 residues within 4Å: Chain C: R.440, V.446, D.447, Y.448 Ligand excluded by PLIP CL.14: 2 residues within 4Å: Chain C: R.295, Y.379 Ligand excluded by PLIP CL.16: 4 residues within 4Å: Chain D: N.264, S.265, F.267, R.286 Ligand excluded by PLIP CL.17: 2 residues within 4Å: Chain D: R.295, Y.379 Ligand excluded by PLIP CL.18: 4 residues within 4Å: Chain D: R.440, V.446, D.447, Y.448 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Budiardjo, S.J. et al., Full and Partial Agonism of a Designed Enzyme Switch. ACS Synth Biol (2016)

Release Date

2016-07-20

Peptides

Beta-galactosidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Beta-galactosidase

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