SMTL ID : 5ixo.1

Crystal structure of the Arabidopsis receptor kinase HAESA LRR ectdomain (apo form).

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

monomer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: S.60, M.62, Y.83, N.84 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 3 residues within 4Å: Chain A: V.113, N.136, F.160 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 7 residues within 4Å: Chain A: N.518, S.541, S.542, N.562, Y.565, H.583, D.584 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.565

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 3 residues within 4Å: Chain A: V.64, N.88, G.89 No protein-ligand interaction detected (PLIP) NAG.5: 3 residues within 4Å: Chain A: S.168, N.171, Q.193 No protein-ligand interaction detected (PLIP) NAG.6: 5 residues within 4Å: Chain A: F.231, N.232, F.254, N.255, M.279 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.231, A:N.255

1 x MG: MAGNESIUM ION(Non-covalent)

MG.7: 5 residues within 4Å: Chain A: S.421, R.443, I.444, S.445, S.467 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.467

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.8: 3 residues within 4Å: Chain A: F.254, D.276, F.301 No protein-ligand interaction detected (PLIP) EDO.9: 5 residues within 4Å: Chain A: K.18, D.23, L.28, S.29, S.32 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.18, A:D.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Santiago, J. et al., Mechanistic insight into a peptide hormone signaling complex mediating floral organ abscission. Elife (2016)

Release Date

2016-04-20

Peptides

Receptor-like protein kinase 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Receptor-like protein kinase 5

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