SMTL ID : 5iz0.1 (3 other biounits)

RORgamma in complex with agonist BIO592 and Coactivator EBI96

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.63 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 6F1: N-(4-ethyl-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-7-yl)-3,4-dimethyl-N-(2,2,2-trifluoroethyl)benzene-1-sulfonamide(Non-covalent)

6F1.1: 16 residues within 4Å: Chain A: C.64, H.67, L.68, A.71, M.102, V.105, M.109, V.120, F.122, F.132, L.135, L.140, I.141, I.144, F.145, H.223 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.68, A:V.120, A:F.132, A:F.132, A:F.132, A:I.141, A:F.145

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: Y.25, F.78, V.104, R.108, T.165 Ligand excluded by PLIP CL.3: 5 residues within 4Å: Chain A: L.198, C.199, H.202, R.203, Q.204 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: R.40, R.111, Y.113, Y.126 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain A: L.106, C.110, F.147, S.148 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: H.66, A.241 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: C.110, F.156 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain A: L.96, G.100, V.168, L.169, R.174 Ligand excluded by PLIP CL.9: 6 residues within 4Å: Chain A: Y.52, Q.53, L.131, F.132, R.133, A.134 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marcotte, D.J. et al., Structural determinant for inducing RORgamma specific inverse agonism triggered by a synthetic benzoxazinone ligand. Bmc Struct.Biol. (2016)

Release Date

2016-06-15

Peptides

Nuclear receptor ROR-gamma: A
GLU-PHE-PRO-TYR-LEU-LEU-SER-LEU-LEU-GLY-GLU-VAL-SER-PRO-GLN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Nuclear receptor ROR-gamma

GLU-PHE-PRO-TYR-LEU-LEU-SER-LEU-LEU-GLY-GLU-VAL-SER-PRO-GLN

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