SMTL ID : 5izl.1 (1 other biounit)

The crystal structure of human eEFSec in complex with GDPCP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.72 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: T.41, T.68, D.112 Ligands: GCP.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.41, A:T.68, H2O.1, H2O.1

1 x GCP: PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER(Non-covalent)

GCP.2: 24 residues within 4Å: Chain A: I.36, D.37, S.38, G.39, K.40, T.41, A.42, E.64, I.67, T.68, G.115, H.116, N.166, K.167, D.169, L.170, A.205, A.206, K.207, P.208, G.209, G.210, P.211 Ligands: MG.1 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:G.39, A:K.40, A:K.40, A:K.40, A:T.41, A:A.42, A:E.64, A:E.64, A:T.68, A:G.115, A:H.116, A:N.166, A:K.167, A:A.206, A:K.207 Water bridges: A:T.41, A:T.41, A:T.68 Salt bridges: A:D.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dobosz-Bartoszek, M. et al., Crystal structures of the human elongation factor eEFSec suggest a non-canonical mechanism for selenocysteine incorporation. Nat Commun (2016)

Release Date

2016-10-12

Peptides

Selenocysteine-specific elongation factor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Selenocysteine-specific elongation factor

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