SMTL ID : 5izn.1 (1 other biounit)

The crystal structure of 50S ribosomal protein L25 from Vibrio vulnificus CMCP6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-tetramer

Ligands

5 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: R.20 Chain C: K.74 Ligands: PO4.2 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain C Water bridges: A:G.17, A:R.20, A:R.23 Salt bridges: A:R.20, C:K.74 PO4.2: 4 residues within 4Å: Chain B: R.20 Chain C: K.74 Chain D: K.74 Ligands: PO4.1 6 PLIP interactions: 4 interactions with chain B, 1 interactions with chain C, 1 interactions with chain D Water bridges: B:G.17, B:S.19, B:R.20 Salt bridges: B:R.20, C:K.74, D:K.74 PO4.3: 1 residues within 4Å: Chain B: R.80 2 PLIP interactions: 2 interactions with chain B Water bridges: B:R.80 Salt bridges: B:R.80 PO4.4: 3 residues within 4Å: Chain C: R.20, H.81, K.84 3 PLIP interactions: 3 interactions with chain C Salt bridges: C:R.20, C:H.81, C:K.84 PO4.5: 2 residues within 4Å: Chain D: K.84, K.86 2 PLIP interactions: 2 interactions with chain D Salt bridges: D:K.84, D:K.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of 50S ribosomal protein L25 from Vibrio vulnificus CMCP6. To Be Published

Release Date

2016-04-06

Peptides

50S ribosomal protein L25: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

50S ribosomal protein L25

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