SMTL ID : 5j0a.1

Crystal structure of PDZ-binding kinase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.74 Å

Oligo State

hetero-1-1-mer

Ligands

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: C.49, N.50, S.55 Chain B: S.59 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:C.49, A:N.50, A:S.55 SO4.2: 4 residues within 4Å: Chain A: R.60, G.167, V.168, S.169 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.168, A:S.169 Salt bridges: A:R.60 SO4.3: 7 residues within 4Å: Chain A: Y.96, G.98, E.99, I.154, K.155, G.156 Chain B: T.87 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.96, A:E.99, A:K.100, A:G.156 Salt bridges: A:K.155 SO4.4: 2 residues within 4Å: Chain A: R.109, P.118 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.109 SO4.5: 4 residues within 4Å: Chain A: H.73, R.131, K.134, V.294 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.73, A:K.134 SO4.9: 4 residues within 4Å: Chain B: R.64, G.171, V.172, S.173 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:V.172, B:S.173, B:S.173 Salt bridges: B:R.64 SO4.10: 5 residues within 4Å: Chain A: S.55, Q.58 Chain B: N.54, H.56, S.59 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.59 Salt bridges: B:H.56 SO4.11: 5 residues within 4Å: Chain B: I.52, R.58, Y.61, Q.62, K.63 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.58, B:K.63, B:K.63 Water bridges: B:Q.62 SO4.12: 3 residues within 4Å: Chain B: H.76, H.77, P.78 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.77 Water bridges: B:H.77 Salt bridges: B:H.76 SO4.13: 4 residues within 4Å: Chain B: R.261, T.284, N.285, E.286 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.285, B:E.286 Salt bridges: B:R.261

4 x HC4: 4'-HYDROXYCINNAMIC ACID(Non-covalent)

HC4.6: 7 residues within 4Å: Chain A: K.44, I.45, N.46, P.47 Chain B: T.192, E.193, Y.255 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:E.193, A:N.46 Hydrophobic interactions: A:I.45 HC4.7: 8 residues within 4Å: Chain A: Y.57, R.80, F.82, E.95, Y.96 Chain B: Y.61, R.84, F.86 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Y.57, A:Y.96, B:Y.100 Salt bridges: A:R.80 Hydrophobic interactions: B:F.86 HC4.8: 7 residues within 4Å: Chain A: T.188, E.189, Y.251 Chain B: K.48, I.49, N.50, P.51 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:E.189, A:Y.251, B:N.50 Hydrophobic interactions: B:I.49 HC4.14: 6 residues within 4Å: Chain B: K.73, R.84, A.85, F.86, T.87, E.88 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:A.85 Hydrogen bonds: B:A.85, B:A.85, B:E.88 Salt bridges: B:K.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, C. et al., The crystal structure of an inactive dimer of PDZ-binding kinase. Biochem.Biophys.Res.Commun. (2016)

Release Date

2016-09-07

Peptides

Lymphokine-activated killer T-cell-originated protein kinase: A
Lymphokine-activated killer T-cell-originated protein kinase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lymphokine-activated killer T-cell-originated protein kinase

Lymphokine-activated killer T-cell-originated protein kinase