- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.25 Å
- Oligo State
- homo-pentamer
- Ligands
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-functional Binders)(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 3 residues within 4Å:- Chain A: K.34, N.79, R.105
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.79
- Salt bridges: A:K.34
SO4.6: 4 residues within 4Å:- Chain A: E.78, R.105
- Chain E: S.25, K.34
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain E- Salt bridges: A:R.105
- Hydrogen bonds: E:S.25
SO4.11: 3 residues within 4Å:- Chain A: S.25, K.34
- Chain B: R.105
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:S.25
- Salt bridges: A:K.34, B:R.105
SO4.12: 3 residues within 4Å:- Chain B: S.25, K.34
- Chain C: R.105
3 PLIP interactions:1 interactions with chain C, 2 interactions with chain B- Salt bridges: C:R.105, B:K.34
- Hydrogen bonds: B:S.25
SO4.14: 4 residues within 4Å:- Chain C: S.25, K.34
- Chain D: E.78, R.105
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:S.25
- Salt bridges: C:K.34, D:R.105
SO4.21: 2 residues within 4Å:- Chain D: S.25
- Chain E: R.105
3 PLIP interactions:1 interactions with chain E, 2 interactions with chain D- Salt bridges: E:R.105
- Hydrogen bonds: D:S.25, D:S.25
- 2 x ACT: ACETATE ION(Non-functional Binders)
ACT.7: 7 residues within 4Å:- Chain A: R.73, V.75, I.127, L.172, E.177
- Chain E: F.38, R.101
3 PLIP interactions:1 interactions with chain E, 2 interactions with chain A- Salt bridges: E:R.101, A:R.73
- Hydrophobic interactions: A:I.127
ACT.22: 5 residues within 4Å:- Chain D: F.38, R.101
- Chain E: R.73, I.127, E.177
3 PLIP interactions:1 interactions with chain D, 2 interactions with chain E- Salt bridges: D:R.101, E:R.73
- Hydrophobic interactions: E:I.127
- 5 x HXA: DOCOSA-4,7,10,13,16,19-HEXAENOIC ACID(Non-covalent)(Non-functional Binders)
HXA.8: 2 residues within 4Å:- Chain A: R.113, R.114
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.114
HXA.13: 2 residues within 4Å:- Chain B: R.113, R.114
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:R.114
HXA.15: 2 residues within 4Å:- Chain C: R.114, M.248
1 PLIP interactions:1 interactions with chain C- Salt bridges: C:R.114
HXA.19: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)HXA.23: 0 residues within 4Å:- (No contacts)
1 PLIP interactions:1 interactions with chain E- Salt bridges: E:R.114
- 1 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Basak, S. et al., Crystal structure and dynamics of a lipid-induced potential desensitized-state of a pentameric ligand-gated channel. Elife (2017)
- Release Date
- 2017-03-15
- Peptides
- Proton-gated ion channel: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.25 Å
- Oligo State
- homo-pentamer
- Ligands
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-functional Binders)(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 2 x ACT: ACETATE ION(Non-functional Binders)
- 5 x HXA: DOCOSA-4,7,10,13,16,19-HEXAENOIC ACID(Non-covalent)(Non-functional Binders)
- 1 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Basak, S. et al., Crystal structure and dynamics of a lipid-induced potential desensitized-state of a pentameric ligand-gated channel. Elife (2017)
- Release Date
- 2017-03-15
- Peptides
- Proton-gated ion channel: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E - Membrane
-
We predict this structure to be a membrane protein.