SMTL ID : 5j1j.1

Structure of FleN-AMPPNP complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-dimer

Ligands

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 23 residues within 4Å: Chain A: G.25, G.26, V.27, G.28, K.29, T.30, N.31, D.53, A.135, N.186, M.187, I.219, P.220, Y.221, D.222, V.225, R.226, V.229 Chain B: K.24, G.25, E.158 Ligands: MG.5, SO4.7 27 PLIP interactions: 20 interactions with chain A, 7 interactions with chain B Hydrogen bonds: A:G.26, A:V.27, A:G.28, A:K.29, A:K.29, A:K.29, A:T.30, A:N.31, A:N.31, A:N.186, A:P.220, A:D.222, A:R.226, B:K.24, B:G.25, B:E.158 Water bridges: A:T.30, A:D.53, A:D.53, A:D.53, A:N.58, A:N.58, A:A.135, B:T.160, B:D.164, B:D.164 Salt bridges: B:K.24 ANP.6: 22 residues within 4Å: Chain A: K.24, G.25, E.158 Chain B: G.25, G.26, V.27, G.28, K.29, T.30, N.31, D.53, A.135, N.186, M.187, I.219, P.220, Y.221, D.222, V.225, R.226, V.229 Ligands: MG.9 27 PLIP interactions: 20 interactions with chain B, 7 interactions with chain A Hydrogen bonds: B:G.26, B:V.27, B:G.28, B:K.29, B:K.29, B:K.29, B:T.30, B:T.30, B:N.31, B:N.31, B:N.186, B:P.220, B:D.222, A:K.24, A:G.25, A:E.158 Water bridges: B:D.53, B:D.53, B:D.53, B:N.58, B:N.58, B:N.58, B:A.135, A:G.23, A:E.158, A:D.164 Salt bridges: A:K.24

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.195, Y.215, G.217, V.218 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.215 Water bridges: A:R.195, A:R.195, A:V.218, A:V.218 Salt bridges: A:R.195 SO4.3: 4 residues within 4Å: Chain A: S.224, F.239, R.241, S.242 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.224, A:S.224 Water bridges: A:S.242, A:S.242, A:K.243 SO4.4: 8 residues within 4Å: Chain A: P.261, P.264, R.265, G.266, H.267, V.276, Q.277, H.278 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.266, A:G.266, A:H.278 Water bridges: A:R.265, A:R.265 Salt bridges: A:H.267 SO4.7: 5 residues within 4Å: Chain A: R.226 Chain B: C.156, E.158, M.187 Ligands: ANP.1 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:E.158 Water bridges: B:E.158, B:E.158, A:R.226, A:R.226 Salt bridges: A:R.226 SO4.8: 2 residues within 4Å: Chain B: T.179, R.180 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.179, B:T.179 Salt bridges: B:R.180

2 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 2 residues within 4Å: Chain A: T.30 Ligands: ANP.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.30, H2O.2, H2O.3, H2O.4 MG.9: 2 residues within 4Å: Chain B: T.30 Ligands: ANP.6 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:T.30, H2O.14, H2O.15, H2O.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chanchal et al., ATP-Induced Structural Remodeling in the Antiactivator FleN Enables Formation of the Functional Dimeric Form. Structure (2017)

Release Date

2017-03-29

Peptides

Site-determining protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Site-determining protein

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