SMTL ID : 5j1t.1

TorsinAdeltaE-LULL1 complex, H. sapiens, bound to VHH-BS2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 22 residues within 4Å: Chain A: N.20, L.21, F.22, Q.24, W.55, T.56, G.57, T.58, G.59, K.60, N.61, F.62, Q.123, N.160, C.232, C.270, K.271, F.274 Chain B: H.153, S.217, R.218 Ligands: MG.2 27 PLIP interactions: 19 interactions with chain A, 8 interactions with chain B Hydrogen bonds: A:F.22, A:G.57, A:T.58, A:T.58, A:G.59, A:K.60, A:N.61, A:F.62, A:Q.123, A:N.160, A:N.160, B:S.217 Water bridges: A:N.61, A:K.271, B:H.153, B:R.218, B:R.218, B:R.218, B:R.218 Salt bridges: A:K.60, A:K.60, A:K.271, A:K.271, A:K.271, B:H.153, B:R.218 pi-Stacking: A:F.62

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: N.61, D.122 Chain B: R.218 Ligands: ATP.1 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: H.92, N.95, Y.99 Chain C: N.33 Ligand excluded by PLIP

2 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.4: 8 residues within 4Å: Chain A: W.55, E.164, F.258, D.267 Chain B: R.188, W.192, D.199, S.209 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:D.199, A:D.267 Water bridges: B:R.188, B:D.189, A:D.267 Salt bridges: A:E.164 BTB.5: 6 residues within 4Å: Chain A: Y.226, E.254, F.257, E.262, R.263, V.264 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:E.262 Water bridges: A:Y.226, B:R.181 Salt bridges: A:E.254

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Demircioglu, F.E. et al., Structures of TorsinA and its disease-mutant complexed with an activator reveal the molecular basis for primary dystonia. Elife (2016)

Release Date

2016-08-17

Peptides

Torsin-1A: A
Torsin-1A-interacting protein 2: B
VHH domain BS-2: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Torsin-1A

Torsin-1A-interacting protein 2

VHH domain BS-2

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