SMTL ID : 5j37.1

Crystal structure of 60-mer BFDV Capsid Protein in complex with single stranded DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-pentamer

Ligands

5 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 2 residues within 4Å: Chain A: S.53, T.54 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.54, A:T.54 PO4.2: 2 residues within 4Å: Chain C: S.53, T.54 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:T.54, C:T.54 Water bridges: C:N.55 PO4.3: 3 residues within 4Å: Chain E: S.53, T.54, N.55 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:T.54, E:T.54, E:T.54, E:N.55 PO4.4: 2 residues within 4Å: Chain G: S.53, T.54 4 PLIP interactions: 4 interactions with chain G Hydrogen bonds: G:T.54, G:T.54 Water bridges: G:N.55, G:N.55 PO4.5: 2 residues within 4Å: Chain I: S.53, T.54 4 PLIP interactions: 4 interactions with chain I Hydrogen bonds: I:T.54, I:T.54, I:T.54 Water bridges: I:N.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sarker, S. et al., Structural insights into the assembly and regulation of distinct viral capsid complexes. Nat Commun (2016)

Release Date

2016-05-04

Peptides

Beak and feather disease virus capsid protein: ACEGI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

C
A

E
B

G
C

I
D

Beak and feather disease virus capsid protein

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