SMTL ID : 5j3s.1

Crystal structure of the catalytic domain of human tyrosyl DNA phosphodiesterase 2 in complex with a small molecule inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

monomer

Ligands

1 x 6FQ: 2,4-dioxo-10-[3-(1H-tetrazol-5-yl)phenyl]-2,3,4,10-tetrahydropyrimido[4,5-b]quinoline-8-carbonitrile(Non-covalent)

6FQ.1: 7 residues within 4Å: Chain A: R.122, R.157, W.188, I.198, A.200, C.202, L.204 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:R.122, A:W.188, A:A.200 Hydrogen bonds: A:R.122, A:R.157 pi-Cation interactions: A:R.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hornyak, P. et al., Mode of action of DNA-competitive small molecule inhibitors of tyrosyl DNA phosphodiesterase 2. Biochem.J. (2016)

Release Date

2016-05-04

Peptides

Tyrosyl-DNA phosphodiesterase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosyl-DNA phosphodiesterase 2

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