- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.17 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x ZN: ZINC ION(Non-covalent)
- 6 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
MES.2: 6 residues within 4Å:- Chain A: I.325, W.326, K.345, D.349, S.353, M.354
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:M.354
- Water bridges: A:Y.355, A:Y.355
- Salt bridges: A:D.349
MES.5: 6 residues within 4Å:- Chain B: I.325, W.326, K.345, D.349, S.353, M.354
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:M.354
- Water bridges: B:Y.355, B:Y.355
- Salt bridges: B:D.349
MES.8: 6 residues within 4Å:- Chain C: I.325, W.326, K.345, D.349, S.353, M.354
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:M.354
- Water bridges: C:Y.355, C:Y.355
- Salt bridges: C:D.349
MES.11: 6 residues within 4Å:- Chain D: I.325, W.326, K.345, D.349, S.353, M.354
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:M.354
- Water bridges: D:Y.355, D:Y.355
- Salt bridges: D:D.349
MES.14: 6 residues within 4Å:- Chain E: I.325, W.326, K.345, D.349, S.353, M.354
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:M.354
- Water bridges: E:Y.355, E:Y.355
- Salt bridges: E:D.349
MES.17: 6 residues within 4Å:- Chain F: I.325, W.326, K.345, D.349, S.353, M.354
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:M.354
- Water bridges: F:Y.355, F:Y.355
- Salt bridges: F:D.349
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 6 residues within 4Å:- Chain A: D.174, S.175, G.176, K.177, T.178, T.179
12 PLIP interactions:10 interactions with chain A, 2 interactions with chain F- Hydrogen bonds: A:D.174, A:S.175, A:G.176, A:K.177, A:T.178, A:T.178, A:T.179
- Water bridges: A:K.177, A:T.179, A:T.179, F:K.163, F:R.243
SO4.6: 6 residues within 4Å:- Chain B: D.174, S.175, G.176, K.177, T.178, T.179
12 PLIP interactions:10 interactions with chain B, 2 interactions with chain D- Hydrogen bonds: B:D.174, B:S.175, B:G.176, B:K.177, B:T.178, B:T.178, B:T.179
- Water bridges: B:K.177, B:T.179, B:T.179, D:K.163, D:R.243
SO4.9: 6 residues within 4Å:- Chain C: D.174, S.175, G.176, K.177, T.178, T.179
12 PLIP interactions:10 interactions with chain C, 2 interactions with chain E- Hydrogen bonds: C:D.174, C:S.175, C:G.176, C:K.177, C:T.178, C:T.178, C:T.179
- Water bridges: C:K.177, C:T.179, C:T.179, E:K.163, E:R.243
SO4.12: 6 residues within 4Å:- Chain D: D.174, S.175, G.176, K.177, T.178, T.179
12 PLIP interactions:10 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:D.174, D:S.175, D:G.176, D:K.177, D:T.178, D:T.178, D:T.179
- Water bridges: D:K.177, D:T.179, D:T.179, C:K.163, C:R.243
SO4.15: 6 residues within 4Å:- Chain E: D.174, S.175, G.176, K.177, T.178, T.179
12 PLIP interactions:10 interactions with chain E, 2 interactions with chain A- Hydrogen bonds: E:D.174, E:S.175, E:G.176, E:K.177, E:T.178, E:T.178, E:T.179
- Water bridges: E:K.177, E:T.179, E:T.179, A:K.163, A:R.243
SO4.18: 6 residues within 4Å:- Chain F: D.174, S.175, G.176, K.177, T.178, T.179
12 PLIP interactions:2 interactions with chain B, 10 interactions with chain F- Water bridges: B:K.163, B:R.243, F:K.177, F:T.179, F:T.179
- Hydrogen bonds: F:D.174, F:S.175, F:G.176, F:K.177, F:T.178, F:T.178, F:T.179
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bonafoux, D. et al., Fragment-Based Discovery of Dual JC Virus and BK Virus Helicase Inhibitors. J.Med.Chem. (2016)
- Release Date
- 2016-07-20
- Peptides
- Large T antigen: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.17 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x ZN: ZINC ION(Non-covalent)
- 6 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bonafoux, D. et al., Fragment-Based Discovery of Dual JC Virus and BK Virus Helicase Inhibitors. J.Med.Chem. (2016)
- Release Date
- 2016-07-20
- Peptides
- Large T antigen: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A