- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.99 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x ZN: ZINC ION(Non-covalent)
- 6 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
MES.2: 6 residues within 4Å:- Chain A: I.325, W.326, K.345, D.349, S.353, M.354
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:K.345, A:M.354
- Water bridges: A:D.349, A:D.349
- Salt bridges: A:D.349
MES.5: 6 residues within 4Å:- Chain B: I.325, W.326, K.345, D.349, S.353, M.354
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:K.345, B:M.354
- Water bridges: B:D.349, B:D.349
- Salt bridges: B:D.349
MES.8: 6 residues within 4Å:- Chain C: I.325, W.326, K.345, D.349, S.353, M.354
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:K.345, C:M.354
- Water bridges: C:D.349, C:D.349
- Salt bridges: C:D.349
MES.11: 6 residues within 4Å:- Chain D: I.325, W.326, K.345, D.349, S.353, M.354
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:K.345, D:M.354
- Water bridges: D:D.349, D:D.349
- Salt bridges: D:D.349
MES.14: 6 residues within 4Å:- Chain E: I.325, W.326, K.345, D.349, S.353, M.354
5 PLIP interactions:5 interactions with chain E- Hydrogen bonds: E:K.345, E:M.354
- Water bridges: E:D.349, E:D.349
- Salt bridges: E:D.349
MES.17: 6 residues within 4Å:- Chain F: I.325, W.326, K.345, D.349, S.353, M.354
5 PLIP interactions:5 interactions with chain F- Hydrogen bonds: F:K.345, F:M.354
- Water bridges: F:D.349, F:D.349
- Salt bridges: F:D.349
- 6 x 6JJ: 6-(2-phenoxyphenyl)[1,2,4]triazolo[3,4-b][1,3,4]thiadiazole(Non-covalent)
6JJ.3: 12 residues within 4Å:- Chain A: W.138, D.174, S.175, G.176, T.179, P.294, K.295, L.298, R.299, L.302, L.309
- Chain F: K.163
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:L.302, A:L.309
- Hydrogen bonds: A:K.295, A:R.299
- pi-Cation interactions: A:R.299
6JJ.6: 12 residues within 4Å:- Chain B: W.138, D.174, S.175, G.176, T.179, P.294, K.295, L.298, R.299, L.302, L.309
- Chain D: K.163
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:L.302, B:L.309
- Hydrogen bonds: B:K.295, B:R.299
- pi-Cation interactions: B:R.299
6JJ.9: 12 residues within 4Å:- Chain C: W.138, D.174, S.175, G.176, T.179, P.294, K.295, L.298, R.299, L.302, L.309
- Chain E: K.163
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:L.302, C:L.309
- Hydrogen bonds: C:K.295, C:R.299
- pi-Cation interactions: C:R.299
6JJ.12: 12 residues within 4Å:- Chain C: K.163
- Chain D: W.138, D.174, S.175, G.176, T.179, P.294, K.295, L.298, R.299, L.302, L.309
5 PLIP interactions:5 interactions with chain D- Hydrophobic interactions: D:L.302, D:L.309
- Hydrogen bonds: D:K.295, D:R.299
- pi-Cation interactions: D:R.299
6JJ.15: 12 residues within 4Å:- Chain A: K.163
- Chain E: W.138, D.174, S.175, G.176, T.179, P.294, K.295, L.298, R.299, L.302, L.309
5 PLIP interactions:5 interactions with chain E- Hydrophobic interactions: E:L.302, E:L.309
- Hydrogen bonds: E:K.295, E:R.299
- pi-Cation interactions: E:R.299
6JJ.18: 12 residues within 4Å:- Chain B: K.163
- Chain F: W.138, D.174, S.175, G.176, T.179, P.294, K.295, L.298, R.299, L.302, L.309
5 PLIP interactions:5 interactions with chain F- Hydrophobic interactions: F:L.302, F:L.309
- Hydrogen bonds: F:K.295, F:R.299
- pi-Cation interactions: F:R.299
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bonafoux, D. et al., Fragment-Based Discovery of Dual JC Virus and BK Virus Helicase Inhibitors. J.Med.Chem. (2016)
- Release Date
- 2016-07-20
- Peptides
- Large T antigen: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.99 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x ZN: ZINC ION(Non-covalent)
- 6 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 6 x 6JJ: 6-(2-phenoxyphenyl)[1,2,4]triazolo[3,4-b][1,3,4]thiadiazole(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bonafoux, D. et al., Fragment-Based Discovery of Dual JC Virus and BK Virus Helicase Inhibitors. J.Med.Chem. (2016)
- Release Date
- 2016-07-20
- Peptides
- Large T antigen: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A