- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.94 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x ZN: ZINC ION(Non-covalent)
- 6 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
MES.2: 6 residues within 4Å:- Chain A: I.325, W.326, K.345, D.349, S.353, M.354
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.345, A:M.354
- Salt bridges: A:D.349
MES.6: 6 residues within 4Å:- Chain B: I.325, W.326, K.345, D.349, S.353, M.354
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:K.345, B:M.354
- Salt bridges: B:D.349
MES.10: 6 residues within 4Å:- Chain C: I.325, W.326, K.345, D.349, S.353, M.354
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:K.345, C:M.354
- Salt bridges: C:D.349
MES.14: 6 residues within 4Å:- Chain D: I.325, W.326, K.345, D.349, S.353, M.354
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:K.345, D:M.354
- Salt bridges: D:D.349
MES.18: 6 residues within 4Å:- Chain E: I.325, W.326, K.345, D.349, S.353, M.354
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:K.345, E:M.354
- Salt bridges: E:D.349
MES.22: 6 residues within 4Å:- Chain F: I.325, W.326, K.345, D.349, S.353, M.354
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:K.345, F:M.354
- Salt bridges: F:D.349
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 8 residues within 4Å:- Chain A: D.174, S.175, G.176, K.177, T.178, T.179
- Chain F: R.243
- Ligands: 6JH.4
8 PLIP interactions:7 interactions with chain A, 1 interactions with chain F- Hydrogen bonds: A:D.174, A:S.175, A:G.176, A:T.178, A:T.178, A:T.179, A:T.179, F:R.243
SO4.7: 8 residues within 4Å:- Chain B: D.174, S.175, G.176, K.177, T.178, T.179
- Chain D: R.243
- Ligands: 6JH.8
8 PLIP interactions:7 interactions with chain B, 1 interactions with chain D- Hydrogen bonds: B:D.174, B:S.175, B:G.176, B:T.178, B:T.178, B:T.179, B:T.179, D:R.243
SO4.11: 8 residues within 4Å:- Chain C: D.174, S.175, G.176, K.177, T.178, T.179
- Chain E: R.243
- Ligands: 6JH.12
8 PLIP interactions:1 interactions with chain E, 7 interactions with chain C- Hydrogen bonds: E:R.243, C:D.174, C:S.175, C:G.176, C:T.178, C:T.178, C:T.179, C:T.179
SO4.15: 8 residues within 4Å:- Chain C: R.243
- Chain D: D.174, S.175, G.176, K.177, T.178, T.179
- Ligands: 6JH.16
8 PLIP interactions:7 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:D.174, D:S.175, D:G.176, D:T.178, D:T.178, D:T.179, D:T.179, C:R.243
SO4.19: 8 residues within 4Å:- Chain A: R.243
- Chain E: D.174, S.175, G.176, K.177, T.178, T.179
- Ligands: 6JH.20
8 PLIP interactions:7 interactions with chain E, 1 interactions with chain A- Hydrogen bonds: E:D.174, E:S.175, E:G.176, E:T.178, E:T.178, E:T.179, E:T.179, A:R.243
SO4.23: 8 residues within 4Å:- Chain B: R.243
- Chain F: D.174, S.175, G.176, K.177, T.178, T.179
- Ligands: 6JH.24
8 PLIP interactions:7 interactions with chain F, 1 interactions with chain B- Hydrogen bonds: F:D.174, F:S.175, F:G.176, F:T.178, F:T.178, F:T.179, F:T.179, B:R.243
- 6 x 6JH: 2-(2-phenoxypyridin-3-yl)[1,3]thiazolo[5,4-c]pyridine(Non-covalent)
6JH.4: 15 residues within 4Å:- Chain A: W.138, L.142, D.174, S.175, G.176, T.179, R.293, P.294, K.295, L.298, R.299, L.302, L.309
- Chain F: K.163
- Ligands: SO4.3
7 PLIP interactions:6 interactions with chain A, 1 interactions with chain F- Hydrophobic interactions: A:W.138, A:L.142, A:R.299, A:L.302, F:K.163
- Hydrogen bonds: A:K.295
- pi-Cation interactions: A:R.299
6JH.8: 15 residues within 4Å:- Chain B: W.138, L.142, D.174, S.175, G.176, T.179, R.293, P.294, K.295, L.298, R.299, L.302, L.309
- Chain D: K.163
- Ligands: SO4.7
7 PLIP interactions:6 interactions with chain B, 1 interactions with chain D- Hydrophobic interactions: B:W.138, B:L.142, B:R.299, B:L.302, D:K.163
- Hydrogen bonds: B:K.295
- pi-Cation interactions: B:R.299
6JH.12: 15 residues within 4Å:- Chain C: W.138, L.142, D.174, S.175, G.176, T.179, R.293, P.294, K.295, L.298, R.299, L.302, L.309
- Chain E: K.163
- Ligands: SO4.11
7 PLIP interactions:6 interactions with chain C, 1 interactions with chain E- Hydrophobic interactions: C:W.138, C:L.142, C:R.299, C:L.302, E:K.163
- Hydrogen bonds: C:K.295
- pi-Cation interactions: C:R.299
6JH.16: 15 residues within 4Å:- Chain C: K.163
- Chain D: W.138, L.142, D.174, S.175, G.176, T.179, R.293, P.294, K.295, L.298, R.299, L.302, L.309
- Ligands: SO4.15
7 PLIP interactions:6 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:W.138, D:L.142, D:R.299, D:L.302, C:K.163
- Hydrogen bonds: D:K.295
- pi-Cation interactions: D:R.299
6JH.20: 15 residues within 4Å:- Chain A: K.163
- Chain E: W.138, L.142, D.174, S.175, G.176, T.179, R.293, P.294, K.295, L.298, R.299, L.302, L.309
- Ligands: SO4.19
7 PLIP interactions:6 interactions with chain E, 1 interactions with chain A- Hydrophobic interactions: E:W.138, E:L.142, E:R.299, E:L.302, A:K.163
- Hydrogen bonds: E:K.295
- pi-Cation interactions: E:R.299
6JH.24: 15 residues within 4Å:- Chain B: K.163
- Chain F: W.138, L.142, D.174, S.175, G.176, T.179, R.293, P.294, K.295, L.298, R.299, L.302, L.309
- Ligands: SO4.23
7 PLIP interactions:6 interactions with chain F, 1 interactions with chain B- Hydrophobic interactions: F:W.138, F:L.142, F:R.299, F:L.302, B:K.163
- Hydrogen bonds: F:K.295
- pi-Cation interactions: F:R.299
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bonafoux, D. et al., Fragment-Based Discovery of Dual JC Virus and BK Virus Helicase Inhibitors. J.Med.Chem. (2016)
- Release Date
- 2016-07-20
- Peptides
- Large T antigen: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.94 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x ZN: ZINC ION(Non-covalent)
- 6 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 6 x 6JH: 2-(2-phenoxypyridin-3-yl)[1,3]thiazolo[5,4-c]pyridine(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bonafoux, D. et al., Fragment-Based Discovery of Dual JC Virus and BK Virus Helicase Inhibitors. J.Med.Chem. (2016)
- Release Date
- 2016-07-20
- Peptides
- Large T antigen: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A